Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00390 ATGGAAAACAATGCACGGGGAAAGTCAAATGCCCATTTCGGTCATGAACTAATGTCGTTTCGAAGCATTGTTCGTGATGTTAGGGATAGCATTGGGAGCTTATCTAGACGAGGTTTCGAGGTCAAGTTGAGTGGTCATCATAGAGGGAAGTCGAATGCGTCGTCGTTAAATGATGTTCATGATCAGTCTCCTGTTGTTCAGAATGGCTGCTGGGCTAATCTTCCACCCGAGCTGTTGTATGATGTCGTTCGAAGACTTGAAGAGAGTGAATGTACATGGCCTTCACGAAAGAACGTCGTGGCCTGTGCTGCGGTGTGTCGTTCTTGGAGAATTATGTGTATGGAGATCGTTAAAGGCCCGGAAGTTTGTGGGAAGCTTACGTTTCCTGTGTCACTGAAGCAGCCCGGACCACGCGATGGATCCGTTCAATGCTTCATTAAGAGGGACAAATCGAACCTAACATACCATCTCTACTTGTGTCTTAGCCCTGCTCTTCTGGTTGAAAACGGGAAGTTTCTTCTCTCTGCTAAGCGTACACGAAGAACGACTAGCACGGAGTATATCATCTCGATGGATGCAGAAAACATTTCGAGATCGAGTAGCTCGTACATCGGAAAGCTGAGGTCGAATTTTCTTGGAACGAAATTCATCGTCTATGATACTCAACCTCCGTACACCGCTGCCCCGCTCCCTCTTCCGGGGAAAACTAGCCGTAGATTCTATTCGAAAAAAGTGTCGCCGAAAGTCCCGACTGGGAGTCACAACATAGCTCATATAAGTTATGAACTTAATGTCTTAGGAACACGGGGACCCCGGAGAATGCACTGTATAATGCATTCGATACCAGTGTCTTCCCTCGATGCAGGGGGTGTTGTTCCAGGCCAACCTGAGCTCCTCCCTCCGAACTCTCTCGACGATTCGTTTCGGAGTGCGTCATTCTCAAAAGCCTTGGATCATTCCATGGAGTTTAGTAGTGCTAGATTCTCCGAAATTGGGCGGGCAGCATTGGATGGCGACGAGGAGGGAAAGATGAGACCTTTGGTACTAAAAAACAAGCCGCCGAGATGGCACGAGCAGCTACAATGTTGGTGCCTGAACTTTCGTGGGCGGGTAACGGTTGCGTCGGTTAAGAATTTTCAGTTGATTGCAGCAATACAACCAGGGGCTGGTGCTCCAACCCCGTCTCAACCAGGGCCACCGGAGCACGACAAGATCATTCTTCAGTTCGGGAAGGTCGGGAAAGACATGTTCACGATGGATTATCGATATCCGCTGTCTGCTTTTCAGGCTTTTGCAATATGCTTGAGTAGCTTTGATACCAAATTGGCTTGTGAATAA 1338 48.21 MENNARGKSNAHFGHELMSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNASSLNDVHDQSPVVQNGCWANLPPELLYDVVRRLEESECTWPSRKNVVACAAVCRSWRIMCMEIVKGPEVCGKLTFPVSLKQPGPRDGSVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLRSNFLGTKFIVYDTQPPYTAAPLPLPGKTSRRFYSKKVSPKVPTGSHNIAHISYELNVLGTRGPRRMHCIMHSIPVSSLDAGGVVPGQPELLPPNSLDDSFRSASFSKALDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAIQPGAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1804780 1807647 - CmoCh16G003900.1 Cmo16g00390 399425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00390 445 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 18 445 - -
Cmo16g00390 445 SUPERFAMILY F-box domain 61 114 IPR036047 GO:0005515
Cmo16g00390 445 ProSitePatterns Tub family signature 2. 430 445 IPR018066 -
Cmo16g00390 445 Pfam F-box domain 71 117 IPR001810 GO:0005515
Cmo16g00390 445 PRINTS Tubby superfamily signature 253 280 IPR000007 -
Cmo16g00390 445 PRINTS Tubby superfamily signature 187 203 IPR000007 -
Cmo16g00390 445 PRINTS Tubby superfamily signature 402 421 IPR000007 -
Cmo16g00390 445 PRINTS Tubby superfamily signature 349 366 IPR000007 -
Cmo16g00390 445 PRINTS Tubby superfamily signature 203 227 IPR000007 -
Cmo16g00390 445 PRINTS Tubby superfamily signature 423 445 IPR000007 -
Cmo16g00390 445 PRINTS Tubby superfamily signature 367 383 IPR000007 -
Cmo16g00390 445 SUPERFAMILY Tubby C-terminal domain-like 120 445 IPR025659 -
Cmo16g00390 445 PANTHER TUBBY-RELATED 18 445 - -
Cmo16g00390 445 ProSitePatterns Tub family signature 1. 367 380 IPR018066 -
Cmo16g00390 445 Pfam Tub family 132 440 IPR000007 -
Cmo16g00390 445 Gene3D Tubby Protein; Chain A 130 439 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02565 Cmo-Chr4:18784932 Cmo16g00390 Cmo-Chr16:1804780 0 dispersed
Cmo14g01689 Cmo-Chr14:13253699 Cmo16g00390 Cmo-Chr16:1804780 5.97E-150 dispersed
Cmo15g00602 Cmo-Chr15:2928155 Cmo16g00390 Cmo-Chr16:1804780 0 dispersed
Cmo16g00390 Cmo-Chr16:1804780 Cmo16g00672 Cmo-Chr16:3330233 2.22E-158 dispersed
Cmo16g00390 Cmo-Chr16:1804780 Cmo04g00542 Cmo-Chr4:2688163 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11264 PF01167 Tub 8.00E-116 CL0395 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00390 K19600 - csv:101216314 855.899