Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo16g00393 | ATGGAGATTGATCTCTCACTCAAAATTGATCAAGAACAAGAACAAGAACAAGAACACGAACAAGAACAAGATCAAGAACAAGTTGCTGCCTCCGGTTCGAGAGAAGGTTTGGCAGTCGACATTAATGGTGGAGAGATTTCGGCGTTACAAATGGAAATGGATCGAATGAAAGAAGAGAACAAAGCGTTGAGACGAGCTGTGGAACAAACCACGAAAGATTACTATGATCTTGAAACCAAAATTGGTATCATCCAACAAAACAACCTCACCAACAAGGCCTCTCGTAGCTTTGTATTATTCCAAGGAAACGAGAAGAAGAGGCATGACATACGAAACCTAGACTTGGATCTCGAGGAAATGTCGAAGAAGAAGAGACAAGCTCGGTCGCCGCCATCGAAGGAGGAGGAGCTAAAGGAGAGGGAACTAGGGTTATCATTAGGGCTCCATGCAAACAACAAAGAAGATAACCATAGGGAATTACAAGAAGAAACAAGAGAAAAGAAGAAGCCACAAAGGCCTGAGTTATTGCAAGGAATGGCACCCCCACAAAACAGGAAAACTAGGGTTTCTGTGCGAGCTAGATGTGAATCTGCCACTATGAACGATGGTTGTCAATGGAGGAAATATGGTCAAAAAATTGCAAAGGGTAATCCGTGCCCTCGAGCCTACTATCGTTGCACAGTTGCCCCGGGATGCCCTGTTAGAAAACAGGTCCAGAGATGCTTAGAAGACATGTCGATTCTGATAACAACGTACGAAGGAACACATAATCATCCACTCCCTGTCGGAGCCACAGCCATGGCTTCCACAGCTTCAGCAGCAGCTTCCTTCATGCTCTTAGACTCCGCTAATACTAACCCTAATATTCTGAACTCCTCTTCCTATTCTCCAAACCCTAATGAGCCCTCTGCCAACAGCTTTTACAGCCCTTCAATGGCTAACTCTTCCACCTCCGATTTGCCCCATTCCTTCTTCCATAGAAACTTTCAACCTAATCATCTTATGGGTTCCCTCCATGGCCGGAGTTGGAACGCTACCGACGGTAATAAGCCACCGCTGACGGCGGAGAGTGTGTCTGCTATTGCTTCTGACCCTAAGTTTCGAGTCGCCGTGGCGGCTGCCATTTCGACGCTTATTAATAAAGAGAACAACCGCACGACGTCGATGCCGGATCCTATTGAACGTTCTTCTTCTTTTGGTTCTGGTAAGGACGGCGACGGCGACGCCGCCAAATAA | 1236 | 46.44 | MEIDLSLKIDQEQEQEQEHEQEQDQEQVAASGSREGLAVDINGGEISALQMEMDRMKEENKALRRAVEQTTKDYYDLETKIGIIQQNNLTNKASRSFVLFQGNEKKRHDIRNLDLDLEEMSKKKRQARSPPSKEEELKERELGLSLGLHANNKEDNHRELQEETREKKKPQRPELLQGMAPPQNRKTRVSVRARCESATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSANTNPNILNSSSYSPNPNEPSANSFYSPSMANSSTSDLPHSFFHRNFQPNHLMGSLHGRSWNATDGNKPPLTAESVSAIASDPKFRVAVAAAISTLINKENNRTTSMPDPIERSSSFGSGKDGDGDAAK | 411 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 1816509 | 1819381 | - | CmoCh16G003930.1 | Cmo16g00393 | 399428 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo16g00393 | 411 | MobiDBLite | consensus disorder prediction | 380 | 395 | - | - | |
Cmo16g00393 | 411 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 11 | 390 | IPR044810 | GO:0003700 | |
Cmo16g00393 | 411 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Cmo16g00393 | 411 | Pfam | WRKY DNA -binding domain | 201 | 259 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo16g00393 | 411 | MobiDBLite | consensus disorder prediction | 115 | 143 | - | - | |
Cmo16g00393 | 411 | Coils | Coil | 103 | 123 | - | - | |
Cmo16g00393 | 411 | Coils | Coil | 2 | 29 | - | - | |
Cmo16g00393 | 411 | MobiDBLite | consensus disorder prediction | 380 | 411 | - | - | |
Cmo16g00393 | 411 | MobiDBLite | consensus disorder prediction | 115 | 188 | - | - | |
Cmo16g00393 | 411 | PANTHER | WRKY TRANSCRIPTION FACTOR 9-RELATED | 11 | 390 | - | - | |
Cmo16g00393 | 411 | Coils | Coil | 46 | 73 | - | - | |
Cmo16g00393 | 411 | MobiDBLite | consensus disorder prediction | 291 | 312 | - | - | |
Cmo16g00393 | 411 | ProSiteProfiles | WRKY domain profile. | 195 | 261 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo16g00393 | 411 | SUPERFAMILY | WRKY DNA-binding domain | 193 | 261 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo16g00393 | 411 | SMART | WRKY_cls | 200 | 260 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo16g00393 | 411 | MobiDBLite | consensus disorder prediction | 151 | 173 | - | - | |
Cmo16g00393 | 411 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Cmo16g00393 | 411 | Gene3D | WRKY domain | 185 | 262 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo16g00393 | Cmo-Chr16:1816509 | Cmo19g00938 | Cmo-Chr19:8631530 | 5.57E-49 | dispersed | |
Cmo04g00547 | Cmo-Chr4:2702157 | Cmo16g00393 | Cmo-Chr16:1816509 | 3.23E-21 | transposed | |
Cmo16g00393 | Cmo-Chr16:1816509 | Cmo04g00546 | Cmo-Chr4:2699744 | 2.32E-111 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11265 | PF03106 | WRKY | 1.50E-24 | CL0274 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo16g00393 | - | - | cmo:103496139 | 451.44 |