Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00393 ATGGAGATTGATCTCTCACTCAAAATTGATCAAGAACAAGAACAAGAACAAGAACACGAACAAGAACAAGATCAAGAACAAGTTGCTGCCTCCGGTTCGAGAGAAGGTTTGGCAGTCGACATTAATGGTGGAGAGATTTCGGCGTTACAAATGGAAATGGATCGAATGAAAGAAGAGAACAAAGCGTTGAGACGAGCTGTGGAACAAACCACGAAAGATTACTATGATCTTGAAACCAAAATTGGTATCATCCAACAAAACAACCTCACCAACAAGGCCTCTCGTAGCTTTGTATTATTCCAAGGAAACGAGAAGAAGAGGCATGACATACGAAACCTAGACTTGGATCTCGAGGAAATGTCGAAGAAGAAGAGACAAGCTCGGTCGCCGCCATCGAAGGAGGAGGAGCTAAAGGAGAGGGAACTAGGGTTATCATTAGGGCTCCATGCAAACAACAAAGAAGATAACCATAGGGAATTACAAGAAGAAACAAGAGAAAAGAAGAAGCCACAAAGGCCTGAGTTATTGCAAGGAATGGCACCCCCACAAAACAGGAAAACTAGGGTTTCTGTGCGAGCTAGATGTGAATCTGCCACTATGAACGATGGTTGTCAATGGAGGAAATATGGTCAAAAAATTGCAAAGGGTAATCCGTGCCCTCGAGCCTACTATCGTTGCACAGTTGCCCCGGGATGCCCTGTTAGAAAACAGGTCCAGAGATGCTTAGAAGACATGTCGATTCTGATAACAACGTACGAAGGAACACATAATCATCCACTCCCTGTCGGAGCCACAGCCATGGCTTCCACAGCTTCAGCAGCAGCTTCCTTCATGCTCTTAGACTCCGCTAATACTAACCCTAATATTCTGAACTCCTCTTCCTATTCTCCAAACCCTAATGAGCCCTCTGCCAACAGCTTTTACAGCCCTTCAATGGCTAACTCTTCCACCTCCGATTTGCCCCATTCCTTCTTCCATAGAAACTTTCAACCTAATCATCTTATGGGTTCCCTCCATGGCCGGAGTTGGAACGCTACCGACGGTAATAAGCCACCGCTGACGGCGGAGAGTGTGTCTGCTATTGCTTCTGACCCTAAGTTTCGAGTCGCCGTGGCGGCTGCCATTTCGACGCTTATTAATAAAGAGAACAACCGCACGACGTCGATGCCGGATCCTATTGAACGTTCTTCTTCTTTTGGTTCTGGTAAGGACGGCGACGGCGACGCCGCCAAATAA 1236 46.44 MEIDLSLKIDQEQEQEQEHEQEQDQEQVAASGSREGLAVDINGGEISALQMEMDRMKEENKALRRAVEQTTKDYYDLETKIGIIQQNNLTNKASRSFVLFQGNEKKRHDIRNLDLDLEEMSKKKRQARSPPSKEEELKERELGLSLGLHANNKEDNHRELQEETREKKKPQRPELLQGMAPPQNRKTRVSVRARCESATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSANTNPNILNSSSYSPNPNEPSANSFYSPSMANSSTSDLPHSFFHRNFQPNHLMGSLHGRSWNATDGNKPPLTAESVSAIASDPKFRVAVAAAISTLINKENNRTTSMPDPIERSSSFGSGKDGDGDAAK 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1816509 1819381 - CmoCh16G003930.1 Cmo16g00393 399428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00393 411 MobiDBLite consensus disorder prediction 380 395 - -
Cmo16g00393 411 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 11 390 IPR044810 GO:0003700
Cmo16g00393 411 MobiDBLite consensus disorder prediction 1 15 - -
Cmo16g00393 411 Pfam WRKY DNA -binding domain 201 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo16g00393 411 MobiDBLite consensus disorder prediction 115 143 - -
Cmo16g00393 411 Coils Coil 103 123 - -
Cmo16g00393 411 Coils Coil 2 29 - -
Cmo16g00393 411 MobiDBLite consensus disorder prediction 380 411 - -
Cmo16g00393 411 MobiDBLite consensus disorder prediction 115 188 - -
Cmo16g00393 411 PANTHER WRKY TRANSCRIPTION FACTOR 9-RELATED 11 390 - -
Cmo16g00393 411 Coils Coil 46 73 - -
Cmo16g00393 411 MobiDBLite consensus disorder prediction 291 312 - -
Cmo16g00393 411 ProSiteProfiles WRKY domain profile. 195 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo16g00393 411 SUPERFAMILY WRKY DNA-binding domain 193 261 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo16g00393 411 SMART WRKY_cls 200 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo16g00393 411 MobiDBLite consensus disorder prediction 151 173 - -
Cmo16g00393 411 MobiDBLite consensus disorder prediction 1 39 - -
Cmo16g00393 411 Gene3D WRKY domain 185 262 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00393 Cmo-Chr16:1816509 Cmo19g00938 Cmo-Chr19:8631530 5.57E-49 dispersed
Cmo04g00547 Cmo-Chr4:2702157 Cmo16g00393 Cmo-Chr16:1816509 3.23E-21 transposed
Cmo16g00393 Cmo-Chr16:1816509 Cmo04g00546 Cmo-Chr4:2699744 2.32E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11265 PF03106 WRKY 1.50E-24 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00393 - - cmo:103496139 451.44