Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00411 ATGATGAGAGTTTTCATTAGTTTTCTCCTCTGTTTACTCTCTGTAACTTGTGCAGCCACTCCAATCACCAACCCCATTTGCCCATTGGACCTTAACTATGTCCTTAGAATCCCATGGACCGCCACCGATTGCCGGAACCCCTTCTTCCAGACCACTGCCAAATCTGCCATGAATGATACCTCCAAGTTCCATTGTTGTCAAACCCTCTTGTCCTTGTTTGGAATCGCTTTGGCCCAACACCTCAAACAAACCTCTCATTTCAACCTCCCAGACCTCGCAACCTCCAATTCTTGCCTTCTTGATTACCAGTCCAAACTCTCCTCTCTCTCCCTTCCTGCCAACCTTGTTTCCCATTGCTTTGATCCCTTACAATTTGTGATATCAGCTAATGTCTGTGCTGGTATTCAAACCACGCGAGATTGGGTTTCAAAACTTGGCCAGAACTCGCCTCTTGATTCTGGGTGTCGGTCGAATCTTGTTGGTTCTGGTTGTGATGCTTGTGTGGCTGCTGGTTTCAAAGTTCAAGCTATTTTGACAGGAATTGATGGTAATAAATCTCATTCCATGGATTGCTTTTACTTTGCCGTTCTTTATGCTGCTGCCATTGTGAATGAATCTGGCCCTGAAGGCGACAGTGCTTTAGATTGCATTTTTAATCTTCAATTGAGTACTCAAAAGGGTTCAAAAAGTAAGCATTCTTCTCTAGTTTATGGCCTTACTGCTGCTGCTGTAGGACTTTTAGTCGTTTTTGTTCTATTGGGAATAGGATTTTGGTTGTACAAAAGCAAACAATTGGCTAAGAAGTCTAGCTTGGAGCTGGATGAACAAGGGTCTAGACCACATGCCAGGCCAAACACTGGATCAATTTGGTTCAAAGTTCATGAGCTTGAGAAGGCAACTGATAACTTTTCTTCAAAGAATTTCATTGGCAGAGGTGGGTTTGGTTTAGTTTACAAAGGGAGATTACCTGATGGAAGCATGGTGGCTGTAAAGAAAGTAATTGAATCAGATTTTCAAGGCAATGCAGAGTTCTGCAATGAAGTTGAAATTATCAGTAATCTAAAGCACAGGAATCTTGTTCCACTTAGGGGCTGCTGCGTGGTTGATGAGGGTTTTGATGAGAGTTCAAGTGAGAGATACCTTGTTTATGATTACATGCCAAATGGAAATCTTGATGATTATTTGTTCCCTATACCATTTGATCAAGATGGAACTGTGAAGAACTCATTGACATGGCCTCAAAGGAAGAACATTATCTTGGATGTGGCAAAAGGCTTAGCTTATCTGCACTATGGAGTGAAGCCTGCAATATATCACAGAGATATCAAGGCGACAAACATATTGTTAGATGCAGATATGAGAGCGAAAGTTGCAGATTTCGGGCTTGCCAAACAGAGTAGGGAAGGACAGTCACATCTAACGACTCGAGTTGCAGGAACTCACGGGTATTTAGCTCCAGAATACGCGCTTTATGGACAACTAACTGAGAAGAGCGATGTTTATAGCTTTGGCGTGGTAGTTTTGGAGATAATGTGTGGGAGAAAAGCTCTTGATTTTTCTTTGGCGTCGTCGCCACGTGCGTTCTTGATAACAGATTGGGCTTGGTCGTTGGTGAAAGGTGGAAAGATAGGGGAAACTTTAGATCCTTGTCTTGTGAAAGATGGAGATTGTTCTAATTCAAATCCAAAAGGCATAATGGAGAGATTTGTTGCGGTTGGAATTTTGTGTTCTCATGTGATGGTGGCTTTGAGGCCTACCATTATGGATGCTCTGAAAATGTTGGAAGGTGACAGTGAAGTTCCTCAAATTTCTGATCGGCCAGTGCCTTATGGGCATCCTTCATTTGTTGGTGATGGCAGCAACTTCAGCATATCACGACATTAA 1884 42.68 MMRVFISFLLCLLSVTCAATPITNPICPLDLNYVLRIPWTATDCRNPFFQTTAKSAMNDTSKFHCCQTLLSLFGIALAQHLKQTSHFNLPDLATSNSCLLDYQSKLSSLSLPANLVSHCFDPLQFVISANVCAGIQTTRDWVSKLGQNSPLDSGCRSNLVGSGCDACVAAGFKVQAILTGIDGNKSHSMDCFYFAVLYAAAIVNESGPEGDSALDCIFNLQLSTQKGSKSKHSSLVYGLTAAAVGLLVVFVLLGIGFWLYKSKQLAKKSSLELDEQGSRPHARPNTGSIWFKVHELEKATDNFSSKNFIGRGGFGLVYKGRLPDGSMVAVKKVIESDFQGNAEFCNEVEIISNLKHRNLVPLRGCCVVDEGFDESSSERYLVYDYMPNGNLDDYLFPIPFDQDGTVKNSLTWPQRKNIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDADMRAKVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDFSLASSPRAFLITDWAWSLVKGGKIGETLDPCLVKDGDCSNSNPKGIMERFVAVGILCSHVMVALRPTIMDALKMLEGDSEVPQISDRPVPYGHPSFVGDGSNFSISRH 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1896063 1897946 + CmoCh16G004110.1 Cmo16g00411 399446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00411 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672|GO:0006468
Cmo16g00411 627 SMART serkin_6 303 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00411 627 Gene3D Phosphorylase Kinase; domain 1 264 385 - -
Cmo16g00411 627 SUPERFAMILY Protein kinase-like (PK-like) 282 595 IPR011009 -
Cmo16g00411 627 ProSiteProfiles Protein kinase domain profile. 303 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00411 627 CDD STKc_IRAK 309 596 - -
Cmo16g00411 627 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 12 625 - -
Cmo16g00411 627 ProSitePatterns Protein kinases ATP-binding region signature. 309 332 IPR017441 GO:0005524
Cmo16g00411 627 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 12 625 - -
Cmo16g00411 627 Pfam Protein kinase domain 305 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00411 627 Pfam SPARK 24 192 IPR043891 -
Cmo16g00411 627 Gene3D Transferase(Phosphotransferase) domain 1 386 605 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00411 Cmo-Chr16:1896063 Cmo14g00677 Cmo-Chr14:3463304 9.37E-79 dispersed
Cmo16g00411 Cmo-Chr16:1896063 Cmo13g00605 Cmo-Chr13:6653499 2.05E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74957 PF00069 Pkinase 1.10E-43 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00411 - - bhj:120088261 1107.05