Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00413 ATGCAGATTCACCTCCTCCATCGCCCCGACACCGTCGAGAAAGACGGCGATGAGGACAAGAAGGAAGATCGGAAGCATGGAAGCGACGACGATAACGATAGCGATAGCGATTTGCCATCATCGTTGAGCCTTAGAGAGCTTTCAAAGGTTATACTTCCACCTTTAGGAGTATCGAGCTTTACTGACGATAATAAAGTGAAGCACCATAAATGGATCATCTCTCCCATGAACTCAAAATACAGGTGGTGGCAGTCGTTCATGGTGGTTTTGGTTGCTTACTCGGTGTGGGTTTACCCAATGGAAGTGGCGTTTATGGACGCGATTCCCAAGCGCCGATTGTTAATTGTAGATAATGTTGTCGATCTCTTCTTCGCCATTGACATCTTCTTCACCTTCTTCGTTGCTTACATTGATCATCGGACTCAGCTTCTCGTTCGCGATTCTAAGAAGATAGCTATTAGGTACCTGTCGACATGGTTCTTGATGGATTTGGCATCAACAATCCCGTTTGAATCACTGGCCTATCTGTCCACAGGCAAATATGATATTTGTCTCCCTTTTGCCCTCCTAGGATTGCTCAGATTCTGGCGACTGCGACGTGTCAAGCAACTTTTTACAAGGCTCGAGAAGGACATTCGATTCAGCTACTTTTGGATTCGATGTGCTAGGCTTCTATTTGTTACTTTGCTCTATGTCCATTGTGCCGCATGCCTCTACTACATGTTGGCTGACCGGTATCCAAATGAAGGAAAGACATGGATTGGAACAGCGTTTCCAAATTTCAGAGAGACTAGCTTTGGAGTGAGATATGTTTCATCCATGTATTGGTCTATCACCACTATGACCACTGTTGGTTATGGTGATCTTCATGCTGTGAACACCATGGAGATGATCTTTATAATCTTCTACATGCTCTTCAATCTCGGGTTAACCGCTTACTTGATCGGTAACATGACAAACCTAGTCGTTGAAGGAACTCGACGCACAATGGAATTCAGAAACAGCATCGAACTGGCATCGAATTTTGTTAACCGAAACCGCCTGCCTTCGAAGTTGAAGGAACACATATTAGCGTACATGTGTTTAAGATTCAAAGCCGAGAGCCTAAACCAACAACACCTGATCGAACAGCTTCCGAAGTCGATTTGCCATAGCATCTGTCAGCAATTGTTTATGCCGACCGTGGAGAAACTCTACCTCTTCAAGGGTGTCTCAAAGGAAACACTTGTGATGCTGGTAGCCGAGATGAAAGCCGAGTATATACCGCCTAAAGAGGACGTGATAGTACATAACGAAAGCCCGGAAGAAGTTTATATCATCGTGTCCGGGGAAATCGAAATTATCGACTGTGAGACGGAGGTGGAACGGATTGTCGGGACATTACACTGTGGCAGTATGTTTGGGGAAGTAGGAGCACTTTGTTGCAAAAACCACAGCTTTACATACAGAACCAAAACTCTTTCACAGCTCTTGAAGCTCAAAACAAGTGTGCTACAAGAAGCTATGCATATCAAACAAGAAGACAGTACAGTCATCGTCAAGAACTTCCTTCAGGAAAGGGAGCTGAGCCACAAAATCACCATAGAAGGTTCGCCCGAAAAAGAGACGACGCCGACTTTGATCGAAGAAAAGGATCAAAGTTTCAACTGGAAACACTCCATTGAGTTAGATTTTAGTAGAGTTAACATATACAAAGGCCATCCAGTAGCCAGAAAACAGGCTTCTTGTGATGATCCTGGAAAGCTCATCAGATTGCCACATTCAATGGAGGAGCTCAAACGAGTTGCAGGTGAAAAGTTTGGATTTGATGCAACAAATGCTGTTTTGACAAATGAAGAAGGCTCTGAAATTGATTCCATTGATGTGATAAGGGATAATGATAAGCTTTTTTTCTCATAG 1899 43.87 MQIHLLHRPDTVEKDGDEDKKEDRKHGSDDDNDSDSDLPSSLSLRELSKVILPPLGVSSFTDDNKVKHHKWIISPMNSKYRWWQSFMVVLVAYSVWVYPMEVAFMDAIPKRRLLIVDNVVDLFFAIDIFFTFFVAYIDHRTQLLVRDSKKIAIRYLSTWFLMDLASTIPFESLAYLSTGKYDICLPFALLGLLRFWRLRRVKQLFTRLEKDIRFSYFWIRCARLLFVTLLYVHCAACLYYMLADRYPNEGKTWIGTAFPNFRETSFGVRYVSSMYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIELASNFVNRNRLPSKLKEHILAYMCLRFKAESLNQQHLIEQLPKSICHSICQQLFMPTVEKLYLFKGVSKETLVMLVAEMKAEYIPPKEDVIVHNESPEEVYIIVSGEIEIIDCETEVERIVGTLHCGSMFGEVGALCCKNHSFTYRTKTLSQLLKLKTSVLQEAMHIKQEDSTVIVKNFLQERELSHKITIEGSPEKETTPTLIEEKDQSFNWKHSIELDFSRVNIYKGHPVARKQASCDDPGKLIRLPHSMEELKRVAGEKFGFDATNAVLTNEEGSEIDSIDVIRDNDKLFFS 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1923154 1928736 + CmoCh16G004130.1 Cmo16g00413 399448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00413 632 MobiDBLite consensus disorder prediction 1 40 - -
Cmo16g00413 632 ProSiteProfiles KHA domain profile. 560 632 IPR021789 -
Cmo16g00413 632 ProSiteProfiles cAMP/cGMP binding motif profile. 400 519 IPR000595 -
Cmo16g00413 632 Pfam Ion transport protein 80 329 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo16g00413 632 SUPERFAMILY Voltage-gated potassium channels 76 323 - -
Cmo16g00413 632 MobiDBLite consensus disorder prediction 7 33 - -
Cmo16g00413 632 SMART cnmp_10 400 517 IPR000595 -
Cmo16g00413 632 Gene3D Jelly Rolls 367 539 IPR014710 -
Cmo16g00413 632 PRINTS EAG/ELK/ERG potassium channel family signature 117 127 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo16g00413 632 PRINTS EAG/ELK/ERG potassium channel family signature 270 287 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo16g00413 632 PRINTS EAG/ELK/ERG potassium channel family signature 296 307 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo16g00413 632 PRINTS EAG/ELK/ERG potassium channel family signature 314 323 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo16g00413 632 Gene3D - 81 323 - -
Cmo16g00413 632 PANTHER POTASSIUM CHANNEL AKT2/3 46 527 - -
Cmo16g00413 632 PANTHER POTASSIUM CHANNEL AKT2/3 555 631 - -
Cmo16g00413 632 PANTHER POTASSIUM CHANNEL AKT1 46 527 IPR045319 GO:0005249|GO:0006813
Cmo16g00413 632 PANTHER POTASSIUM CHANNEL AKT1 555 631 IPR045319 GO:0005249|GO:0006813
Cmo16g00413 632 Pfam Cyclic nucleotide-binding domain 423 502 IPR000595 -
Cmo16g00413 632 SUPERFAMILY cAMP-binding domain-like 327 516 IPR018490 -
Cmo16g00413 632 CDD CAP_ED 400 503 IPR000595 -
Cmo16g00413 632 Pfam KHA, dimerisation domain of potassium ion channel 560 631 IPR021789 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00566 Cmo16g00413 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00587 Cmo-Chr13:6533380 Cmo16g00413 Cmo-Chr16:1923154 1.33E-174 dispersed
Cmo16g00413 Cmo-Chr16:1923154 Cmo18g00440 Cmo-Chr18:2880696 1.60E-173 dispersed
Cmo16g00413 Cmo-Chr16:1923154 Cmo04g00566 Cmo-Chr4:2810012 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00413 K21867 - csv:101205212 1088.94