Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00423 ATGGGCAGAATACCATGTTCTTTTTGCCGGAGCAGTAGTCGTTGCCGCCCTAAGAAGGCGGCTCAGTCGTCACTGTCCCCATTGCCTCAGCCACCTCCGCAGACTGGCGTCTGCTCTCCTCCCATTAACAATAATGGCAGCGGCTTGGTCGGTGGTGGTGGTGGTGGGGCCATGGGAAAGGTGAAGAAGAAGGCTGGAGGAGCTAGGCTGTGGATGCGTCTTGACAGGTGGGGGCAGACGGAGCTTATAGAGTGGGACAAGAGCGCCATAATCCGGCGTGCTGCAATTCCGGCCAGGGATTTGAGGATTCTTGGTCCTGTTTTCTCACAATCCTCCAACATACTCGGTAAGTTTATATTTTACTCTGCAATCAGTTTTGAACTATGGGTTTACTCTGTAGAAGTGCTGTTTGTTGCCTATCTTTCCAGGGAAAAGGCCATGGTCGTTAGTTTAGAATTCATAAAAGCTATAGTTACTGCTGAAGAAGTTCTACTACTTGACCCTCTTTGCCAAGAGGTTATTCCATTTGTGGATCGACTAAGGAAGCTACTTGCTAAGATGAGTTCATCTCATGTTGAAAATGATGTTAATGTTTCGAGAGGAGGAAAGCGGTTGCCAGTTTCCGAAGCTGTTGATGAGCAGTATGAGCTGCCGTTCGAGTTTCAAGTTCTTGAAATTGCGTTGGAGGTTGTTTGCATATACTTAGATTCCACCGTGAAAGACCTTGAGAGAGATGCTTATCCAGTCCTGGACGAACTGGCTATGAATGTCAGCACCAAGAATCTAGAACGTGTGAGGAGCTTGAAAAGTAATCTTACTCGTATTCTTGCACGCGTTCAGAAGGTGCGGGACGAGATAGAACATCTATTAGATGACAACGAAGATATGGGACAACTATATTTGACAAGAAAATGGATGCAGAATCAGCAGTCCGATGCTTCCCTGGGAGTAGTCGCTTCCAACAGCACCACTGTCACCGTTCCTCATCTGCGTCGACTTAGTTCCACCAGGAGCGGAAGTGCAGTAACCAGCAATCTTTCGGATGATAACGACGTAGAGGATCTGGAAATGTTGCTCGAGGCATACTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATCGACGACACCGAGGATTACGTCAACATTCAACTTGACAGTCAAAGAAACGAACTCATTCAGTTTCAGTTGACACTGACCATTGCTTCATTTGCCATAGCTGTCGAAACCTTAATCGCCGGGTTGTTTGGTATGAACATCCCTTGTATATTGTACGAGACGAACGGGATATTCGAGTACTTTGTCGGAGGTGCTTCAGCAGGGTGTTTGTTGATTTTCCTGCTTATTTTTGGCGAATTGATTTGTGTTCGAGCGAGCAGCATAAACGTGTACATGGCACAATTTCTTATCATGTTACAGGAAAAGGAGTTTCTTGTATTTCTTACTATGGAGAATTCTAAAGGGTCATCCAACGTCAGAAATTTTATGAGTTCTGGGAAACATGCACTACTCCCTCCCAAAAGTCCCTTTCCGAGCGTTTCTCCATCATATACTGAATTTGTTCCTAACACTGTTATCGGTGCAAAAGCTGTTCAGAGACCACGAGATGGTAACAGCTACCATCAAAGAACTTCTTCCGAAAGCATTTTAATAGAGGAGCAGCCTTCTTGGCTTGATGATCTCCTCAATGAGCCAGAGACCCCTGTTCGCAGAGTTGGTCATCGACGTTCGTCGAGTGACTCCTTTGCATATACAGATGCTGCCAATGTTAATTTTGATAGTATCACGCAAGAAGATTTCAAATATGCAAATGCAATTCCTGGACACTCATGGTTATCTCAAGAATTTGATCATCAAAGGGATGCAAGGCATGCTTCATTCTATACTGAAGCGAATGTAACAAAACAGAAGAATAGGGTGTGGGAATCATCTTTATCTACCATGAATAATCCTATTGCTCTTCATTCTCCCAGGGAGAACATTGTTATTCATACCTCAGGACCATTAAGCGCTCCGCAGGAAGCAGATGGTTTGCCTTCTACAGCAAGTGAAAAGCAGGATCCAGTTGAGTCTGGTTCACACGATCCAAAAGTCTCTTCTGAAAGGAAAGATGTTTCTCATGGAAAATCATCTTCGTCTGATACAGAAAATAAACGCGCCAAACAGCAATTTGCTCAGCGTTCAAGGGTTCGGAAACTTCAATATATAGCTGAGCTTGAAAGGAAAGTACAAGCTCTGCAGGCAGAGGGCTCTGAAGTCTCAGCTGAGCTTGAATTTCTCAACCAGCAGCATCTTATTCTTAGCATGGAAAACAATGCTCTCAAGCAGCGGTTAGAGAATTTAGCTCAAGAGCAGCTAATTAAATACTTACAATTTCCTCTTATTTCTACAAGAAAGCTAAGAGATGAACTATGTCCAGTGGAGCAGGAAGTACTGGAGAGGGAGATTGGAAGGCTAAGAGCTATGCACCAGCAGCAACATCAGCAGCAGCAACATCAGCAGCAGCAACAACCTCAACCACTACGACCCTCTTCTAGTCATCGACGTAGTTCGAGCAAAGACCTCGACAATCAATTTGCCAATCTTTCTTTGAAGCAAAAGGATTCTGGTTCAAGTCGTGACCCGGTAACAGGTCCAGTGCGCAGTTAG 2667 44.77 MGRIPCSFCRSSSRCRPKKAAQSSLSPLPQPPPQTGVCSPPINNNGSGLVGGGGGGAMGKVKKKAGGARLWMRLDRWGQTELIEWDKSAIIRRAAIPARDLRILGPVFSQSSNILGKFIFYSAISFELWVYSVEVLFVAYLSREKAMVVSLEFIKAIVTAEEVLLLDPLCQEVIPFVDRLRKLLAKMSSSHVENDVNVSRGGKRLPVSEAVDEQYELPFEFQVLEIALEVVCIYLDSTVKDLERDAYPVLDELAMNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMGQLYLTRKWMQNQQSDASLGVVASNSTTVTVPHLRRLSSTRSGSAVTSNLSDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDSQRNELIQFQLTLTIASFAIAVETLIAGLFGMNIPCILYETNGIFEYFVGGASAGCLLIFLLIFGELICVRASSINVYMAQFLIMLQEKEFLVFLTMENSKGSSNVRNFMSSGKHALLPPKSPFPSVSPSYTEFVPNTVIGAKAVQRPRDGNSYHQRTSSESILIEEQPSWLDDLLNEPETPVRRVGHRRSSSDSFAYTDAANVNFDSITQEDFKYANAIPGHSWLSQEFDHQRDARHASFYTEANVTKQKNRVWESSLSTMNNPIALHSPRENIVIHTSGPLSAPQEADGLPSTASEKQDPVESGSHDPKVSSERKDVSHGKSSSSDTENKRAKQQFAQRSRVRKLQYIAELERKVQALQAEGSEVSAELEFLNQQHLILSMENNALKQRLENLAQEQLIKYLQFPLISTRKLRDELCPVEQEVLEREIGRLRAMHQQQHQQQQHQQQQQPQPLRPSSSHRRSSSKDLDNQFANLSLKQKDSGSSRDPVTGPVRS 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1976093 1985856 + CmoCh16G004230.1 Cmo16g00423 399458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00423 888 MobiDBLite consensus disorder prediction 673 732 - -
Cmo16g00423 888 MobiDBLite consensus disorder prediction 694 729 - -
Cmo16g00423 888 Gene3D - 58 168 - -
Cmo16g00423 888 CDD bZIP_plant_RF2 724 770 IPR044759 GO:0003700|GO:0006355
Cmo16g00423 888 Coils Coil 265 292 - -
Cmo16g00423 888 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 5 116 IPR039204 -
Cmo16g00423 888 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 141 457 IPR039204 -
Cmo16g00423 888 SMART brlzneu 720 779 IPR004827 GO:0003700|GO:0006355
Cmo16g00423 888 Gene3D Magnesium transport protein CorA, transmembrane region 176 398 - -
Cmo16g00423 888 Gene3D - 722 776 - -
Cmo16g00423 888 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 403 454 IPR045863 -
Cmo16g00423 888 MobiDBLite consensus disorder prediction 828 852 - -
Cmo16g00423 888 MobiDBLite consensus disorder prediction 20 42 - -
Cmo16g00423 888 SUPERFAMILY Leucine zipper domain 731 773 IPR046347 GO:0003700|GO:0006355
Cmo16g00423 888 MobiDBLite consensus disorder prediction 827 888 - -
Cmo16g00423 888 Coils Coil 735 790 - -
Cmo16g00423 888 CDD Mrs2_Mfm1p-like 71 463 IPR039204 -
Cmo16g00423 888 PANTHER MAGNESIUM TRANSPORTER MRS2-4-RELATED 5 116 - -
Cmo16g00423 888 PANTHER MAGNESIUM TRANSPORTER MRS2-4-RELATED 141 457 - -
Cmo16g00423 888 MobiDBLite consensus disorder prediction 861 882 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00576 Cmo16g00423 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01948 Cmo-Chr4:9969248 Cmo16g00423 Cmo-Chr16:1976093 7.10E-112 dispersed
Cmo11g01879 Cmo-Chr11:13083836 Cmo16g00423 Cmo-Chr16:1976093 3.49E-24 dispersed
Cmo16g00423 Cmo-Chr16:1976093 Cmo17g00183 Cmo-Chr17:1083418 2.27E-92 dispersed
Cmo19g00057 Cmo-Chr19:317618 Cmo16g00423 Cmo-Chr16:1976093 6.12E-74 dispersed
Cmo19g00556 Cmo-Chr19:6400264 Cmo16g00423 Cmo-Chr16:1976093 2.85E-65 dispersed
Cmo19g00926 Cmo-Chr19:8586158 Cmo16g00423 Cmo-Chr16:1976093 2.15E-23 dispersed
Cmo04g00576 Cmo-Chr4:2876910 Cmo16g00423 Cmo-Chr16:1976093 0 transposed
Cmo16g00423 Cmo-Chr16:1976093 Cmo04g00575 Cmo-Chr4:2868516 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00423 K16075 - csv:101203254 642.114