Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00423 ATGGGCAGAATACCATGTTCTTTTTGCCGGAGCAGTAGTCGTTGCCGCCCTAAGAAGGCGGCTCAGTCGTCACTGTCCCCATTGCCTCAGCCACCTCCGCAGACTGGCGTCTGCTCTCCTCCCATTAACAATAATGGCAGCGGCTTGGTCGGTGGTGGTGGTGGTGGGGCCATGGGAAAGGTGAAGAAGAAGGCTGGAGGAGCTAGGCTGTGGATGCGTCTTGACAGGTGGGGGCAGACGGAGCTTATAGAGTGGGACAAGAGCGCCATAATCCGGCGTGCTGCAATTCCGGCCAGGGATTTGAGGATTCTTGGTCCTGTTTTCTCACAATCCTCCAACATACTCGGTAAGTTTATATTTTACTCTGCAATCAGTTTTGAACTATGGGTTTACTCTGTAGAAGTGCTGTTTGTTGCCTATCTTTCCAGGGAAAAGGCCATGGTCGTTAGTTTAGAATTCATAAAAGCTATAGTTACTGCTGAAGAAGTTCTACTACTTGACCCTCTTTGCCAAGAGGTTATTCCATTTGTGGATCGACTAAGGAAGCTACTTGCTAAGATGAGTTCATCTCATGTTGAAAATGATGTTAATGTTTCGAGAGGAGGAAAGCGGTTGCCAGTTTCCGAAGCTGTTGATGAGCAGTATGAGCTGCCGTTCGAGTTTCAAGTTCTTGAAATTGCGTTGGAGGTTGTTTGCATATACTTAGATTCCACCGTGAAAGACCTTGAGAGAGATGCTTATCCAGTCCTGGACGAACTGGCTATGAATGTCAGCACCAAGAATCTAGAACGTGTGAGGAGCTTGAAAAGTAATCTTACTCGTATTCTTGCACGCGTTCAGAAGGTGCGGGACGAGATAGAACATCTATTAGATGACAACGAAGATATGGGACAACTATATTTGACAAGAAAATGGATGCAGAATCAGCAGTCCGATGCTTCCCTGGGAGTAGTCGCTTCCAACAGCACCACTGTCACCGTTCCTCATCTGCGTCGACTTAGTTCCACCAGGAGCGGAAGTGCAGTAACCAGCAATCTTTCGGATGATAACGACGTAGAGGATCTGGAAATGTTGCTCGAGGCATACTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATCGACGACACCGAGGATTACGTCAACATTCAACTTGACAGTCAAAGAAACGAACTCATTCAGTTTCAGTTGACACTGACCATTGCTTCATTTGCCATAGCTGTCGAAACCTTAATCGCCGGGTTGTTTGGTATGAACATCCCTTGTATATTGTACGAGACGAACGGGATATTCGAGTACTTTGTCGGAGGTGCTTCAGCAGGGTGTTTGTTGATTTTCCTGCTTATTTTTGGCGAATTGATTTGTGTTCGAGCGAGCAGCATAAACGTGTACATGGCACAATTTCTTATCATGTTACAGGAAAAGGAGTTTCTTGTATTTCTTACTATGGAGAATTCTAAAGGGTCATCCAACGTCAGAAATTTTATGAGTTCTGGGAAACATGCACTACTCCCTCCCAAAAGTCCCTTTCCGAGCGTTTCTCCATCATATACTGAATTTGTTCCTAACACTGTTATCGGTGCAAAAGCTGTTCAGAGACCACGAGATGGTAACAGCTACCATCAAAGAACTTCTTCCGAAAGCATTTTAATAGAGGAGCAGCCTTCTTGGCTTGATGATCTCCTCAATGAGCCAGAGACCCCTGTTCGCAGAGTTGGTCATCGACGTTCGTCGAGTGACTCCTTTGCATATACAGATGCTGCCAATGTTAATTTTGATAGTATCACGCAAGAAGATTTCAAATATGCAAATGCAATTCCTGGACACTCATGGTTATCTCAAGAATTTGATCATCAAAGGGATGCAAGGCATGCTTCATTCTATACTGAAGCGAATGTAACAAAACAGAAGAATAGGGTGTGGGAATCATCTTTATCTACCATGAATAATCCTATTGCTCTTCATTCTCCCAGGGAGAACATTGTTATTCATACCTCAGGACCATTAAGCGCTCCGCAGGAAGCAGATGGTTTGCCTTCTACAGCAAGTGAAAAGCAGGATCCAGTTGAGTCTGGTTCACACGATCCAAAAGTCTCTTCTGAAAGGAAAGATGTTTCTCATGGAAAATCATCTTCGTCTGATACAGAAAATAAACGCGCCAAACAGCAATTTGCTCAGCGTTCAAGGGTTCGGAAACTTCAATATATAGCTGAGCTTGAAAGGAAAGTACAAGCTCTGCAGGCAGAGGGCTCTGAAGTCTCAGCTGAGCTTGAATTTCTCAACCAGCAGCATCTTATTCTTAGCATGGAAAACAATGCTCTCAAGCAGCGGTTAGAGAATTTAGCTCAAGAGCAGCTAATTAAATACTTACAATTTCCTCTTATTTCTACAAGAAAGCTAAGAGATGAACTATGTCCAGTGGAGCAGGAAGTACTGGAGAGGGAGATTGGAAGGCTAAGAGCTATGCACCAGCAGCAACATCAGCAGCAGCAACATCAGCAGCAGCAACAACCTCAACCACTACGACCCTCTTCTAGTCATCGACGTAGTTCGAGCAAAGACCTCGACAATCAATTTGCCAATCTTTCTTTGAAGCAAAAGGATTCTGGTTCAAGTCGTGACCCGGTAACAGGTCCAGTGCGCAGTTAG 2667 44.77 MGRIPCSFCRSSSRCRPKKAAQSSLSPLPQPPPQTGVCSPPINNNGSGLVGGGGGGAMGKVKKKAGGARLWMRLDRWGQTELIEWDKSAIIRRAAIPARDLRILGPVFSQSSNILGKFIFYSAISFELWVYSVEVLFVAYLSREKAMVVSLEFIKAIVTAEEVLLLDPLCQEVIPFVDRLRKLLAKMSSSHVENDVNVSRGGKRLPVSEAVDEQYELPFEFQVLEIALEVVCIYLDSTVKDLERDAYPVLDELAMNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMGQLYLTRKWMQNQQSDASLGVVASNSTTVTVPHLRRLSSTRSGSAVTSNLSDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDSQRNELIQFQLTLTIASFAIAVETLIAGLFGMNIPCILYETNGIFEYFVGGASAGCLLIFLLIFGELICVRASSINVYMAQFLIMLQEKEFLVFLTMENSKGSSNVRNFMSSGKHALLPPKSPFPSVSPSYTEFVPNTVIGAKAVQRPRDGNSYHQRTSSESILIEEQPSWLDDLLNEPETPVRRVGHRRSSSDSFAYTDAANVNFDSITQEDFKYANAIPGHSWLSQEFDHQRDARHASFYTEANVTKQKNRVWESSLSTMNNPIALHSPRENIVIHTSGPLSAPQEADGLPSTASEKQDPVESGSHDPKVSSERKDVSHGKSSSSDTENKRAKQQFAQRSRVRKLQYIAELERKVQALQAEGSEVSAELEFLNQQHLILSMENNALKQRLENLAQEQLIKYLQFPLISTRKLRDELCPVEQEVLEREIGRLRAMHQQQHQQQQHQQQQQPQPLRPSSSHRRSSSKDLDNQFANLSLKQKDSGSSRDPVTGPVRS 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1976093 1985856 + CmoCh16G004230.1 Cmo16g00423 399458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00423 888 MobiDBLite consensus disorder prediction 673 732 - -
Cmo16g00423 888 MobiDBLite consensus disorder prediction 694 729 - -
Cmo16g00423 888 Gene3D - 58 168 - -
Cmo16g00423 888 CDD bZIP_plant_RF2 724 770 IPR044759 GO:0003700|GO:0006355
Cmo16g00423 888 Coils Coil 265 292 - -
Cmo16g00423 888 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 5 116 IPR039204 -
Cmo16g00423 888 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 141 457 IPR039204 -
Cmo16g00423 888 SMART brlzneu 720 779 IPR004827 GO:0003700|GO:0006355
Cmo16g00423 888 Gene3D Magnesium transport protein CorA, transmembrane region 176 398 - -
Cmo16g00423 888 Gene3D - 722 776 - -
Cmo16g00423 888 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 403 454 IPR045863 -
Cmo16g00423 888 MobiDBLite consensus disorder prediction 828 852 - -
Cmo16g00423 888 MobiDBLite consensus disorder prediction 20 42 - -
Cmo16g00423 888 SUPERFAMILY Leucine zipper domain 731 773 IPR046347 GO:0003700|GO:0006355
Cmo16g00423 888 MobiDBLite consensus disorder prediction 827 888 - -
Cmo16g00423 888 Coils Coil 735 790 - -
Cmo16g00423 888 CDD Mrs2_Mfm1p-like 71 463 IPR039204 -
Cmo16g00423 888 PANTHER MAGNESIUM TRANSPORTER MRS2-4-RELATED 5 116 - -
Cmo16g00423 888 PANTHER MAGNESIUM TRANSPORTER MRS2-4-RELATED 141 457 - -
Cmo16g00423 888 MobiDBLite consensus disorder prediction 861 882 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00423 K16075 MRS2, MFM1; magnesium transporter - csv:101203254 642.114
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00576 Cmo16g00423 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01948 Cmo-Chr4:9969248 Cmo16g00423 Cmo-Chr16:1976093 7.10E-112 dispersed
Cmo11g01879 Cmo-Chr11:13083836 Cmo16g00423 Cmo-Chr16:1976093 3.49E-24 dispersed
Cmo16g00423 Cmo-Chr16:1976093 Cmo17g00183 Cmo-Chr17:1083418 2.27E-92 dispersed
Cmo19g00057 Cmo-Chr19:317618 Cmo16g00423 Cmo-Chr16:1976093 6.12E-74 dispersed
Cmo19g00556 Cmo-Chr19:6400264 Cmo16g00423 Cmo-Chr16:1976093 2.85E-65 dispersed
Cmo19g00926 Cmo-Chr19:8586158 Cmo16g00423 Cmo-Chr16:1976093 2.15E-23 dispersed
Cmo04g00576 Cmo-Chr4:2876910 Cmo16g00423 Cmo-Chr16:1976093 0 transposed
Cmo16g00423 Cmo-Chr16:1976093 Cmo04g00575 Cmo-Chr4:2868516 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g1127 . . . . . . . . . . . . . . Sed06g1767 Cpe01g00486 Cpe14g00328 Bhi01g01582 Tan01g0794 Cmetu06g0931 . Hepe07g0517 Mch10g0558 . Cla05g01019 Cam05g1113 Cec05g1123 Cco05g1113 . . . Cone3ag0919 Cone10ag0892 . . . Csa03g01927 Chy10g00753 Cme06g01213 Blo06g00800 . . Bda07g01669 . . . . . Cmo04g00576 Cmo16g00423 . . . . . . . . . . . . . . . . . . . . Lsi05g00156 . Chy06g01143 Cme10g00697
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo14g01066 CST 1 447 MRS2 Gene Family AT1G16010 84.1 4.0e-205 711.4
Cmo01g00196 CST 1 448 MRS2 Gene Family AT1G16010 83.5 3.7e-203 704.9
Cmo12g00082 . 8 381 MRS2 Gene Family AT1G16010 53.7 7.4e-111 398.3
Cmo17g00183 CST 1 366 MRS2 Gene Family AT5G64560 79.3 7.7e-157 550.8
Cmo08g01086 CST 1 358 MRS2 Gene Family AT5G64560 79.3 1.1e-155 547.0
Cmo19g00057 . 1 353 MRS2 Gene Family AT5G64560 64.3 2.8e-114 409.5
Cmo11g01427 CST 39 498 MRS2 Gene Family AT3G19640 64.4 2.6e-149 526.2
Cmo19g00556 CST 14 539 MRS2 Gene Family AT3G19640 55.3 1.9e-139 493.4
Cmo04g00575 . 1 456 MRS2 Gene Family AT3G58970 62.5 1.5e-143 506.9
Cmo16g00423 CST 1 457 MRS2 Gene Family AT3G58970 58.3 1.8e-125 446.8
Cmo12g00082 . 9 381 MRS2 Gene Family AT2G03620 66.6 3.0e-133 472.6
Cmo14g01066 CST 13 447 MRS2 Gene Family AT2G03620 53.7 2.6e-113 406.4
Cmo01g00196 CST 13 448 MRS2 Gene Family AT2G03620 52.9 1.7e-112 403.7
Cmo08g01086 CST 1 320 MRS2 Gene Family AT5G09690 77.5 1.1e-127 453.8
Cmo17g00183 CST 1 328 MRS2 Gene Family AT5G09690 74.9 1.2e-126 450.3
Cmo19g00057 . 1 314 MRS2 Gene Family AT5G09690 62.0 1.9e-95 346.7
Cmo01g00196 CST 40 384 MRS2 Gene Family AT5G09690 50.1 3.5e-78 289.3
Cmo14g01066 CST 40 383 MRS2 Gene Family AT5G09690 50.6 4.6e-78 288.9
Cmo08g01086 CST 23 280 MRS2 Gene Family AT5G09720 70.1 1.4e-89 327.0
Cmo17g00183 CST 23 288 MRS2 Gene Family AT5G09720 66.8 6.5e-87 318.2
Cmo19g00057 . 37 285 MRS2 Gene Family AT5G09720 58.6 1.4e-68 257.3
Cmo14g01066 CST 1 447 MRS2 Gene Family AT1G80900 82.6 8.6e-200 693.7
Cmo01g00196 CST 1 448 MRS2 Gene Family AT1G80900 81.7 4.0e-197 684.9
Cmo12g00082 . 5 381 MRS2 Gene Family AT1G80900 54.1 1.2e-108 391.0
Cmo13g00275 . 114 453 MRS2 Gene Family AT5G22830 83.8 1.9e-157 553.1
Cmo12g00817 . 114 453 MRS2 Gene Family AT5G22830 81.8 5.3e-152 535.0
Cmo13g00277 . 114 257 MRS2 Gene Family AT5G22830 79.9 4.0e-59 226.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003636 0 2 1 1 1 2 2 2 2 1 2 1 2 1 1 2 2 2 2 1 1 1 2 2 1 1 1 5 2 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00423 Cmo_Chr16 FPKM 90.55677 95.661026 75.04895 76.472168 150.47261 141.407608 138.962372 100.115883 101.483284 88.084312