Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00430 ATGGGTTCCGTTTGTTGTAAGCCTTCTGCTATTGAAGATAGCAAGGAAAGTCCAAGGGAGAGGCTGTCGAGTAAGACCTCGTCTGACCTGCGTGTGGCGAGAGTGACTTCATCGACAAGGGAAGAAGTGTATCGATCTAAAGATCAGCACGATGGTAATGATGCAAGAGTGATGTTGATTGACAAGCAGGTTAATGGGTCGGGCCGAATGCAGGGTGAGAATTTTGAGAGGAAGAGGGAGAAGATGGAGCATATGGGTGCTCAACATCCTTCAATGGGTAGAATTCCGAAGGCAGCTGAGGGAGACCACGTTGCTGCAGGGTGGCCTCCATGGCTGGCTGCAGTTGCTGGAGAGGCAATCAGAGGCTGGCTACCCCGACGAGCTGATTCTTTCGAGAAATTGGATAAAATTGGCCAAGGAACTTATAGTAATGTATATAGGGCTCGTGACCTTGACCAAAAGAAAATCGTTGCTTTGAAGAAAGTAAGGTTCGACAACTTAGAACCCGAGAGCGTCCGCTTTATGGCGAGGGAAATTCACATATTGCGTAGACTCGATCATCCAAATGTAATAAAGCTGGAGGGTCTAGTCACATCAAGGATGTCTTGCAGCCTTTATCTTGTTTTCGAGTACATGGAACATGACTTGGCAGGACTTGCTTCACATCCTGGCGTGAAGTTTACAGAGGCGCAGGTCAAGTGTTACATGCAGCAACTTTTACGGGGACTCGATCATTGTCACAGTCGTGGAGTTCTACATCGTGACATAAAGGGCTCGAACCTTTTAATTGACAACAATGGCATCTTGAAAATTGCTGACTTTGGTCTGGCAAGTCTTTTTGATATCCACCAAAATCAGCCACTGACAAGTCGGGTCGTGACTCTTTGGTATCGACCGCCTGAGCTTTTACTTGGCGCTACTTATTATGGTATAGCTGTAGATTTATGGAGTACTGGCTGCATACTTGCTGAATTGTATGCTGGGAAGCCCATTATGCCAGGAAGAACAGAGGTGGAACAGCTACATAAAATATTTAAACTCTGTGGCTCTCCTTCAGAGGATTATTGGAGAAAATCAAGGTTGCCACATGCAACCATATTTAAGCCCCAACAGCCCTATCGACGTTGTGTTGCAGACACGTTTAAGGATTTCCCTGCACCAGCTTTAGCTCTCATTGAGACGTTACTCTCGGTAGATCCTGCTGATCGTGGCTCTGCTGCTCTCGCCCTTAAAAGTGAATTCTTTTCAACAAAGCCTCTTCCTTGTGATTCTTCAAGCTTGCCAAAGTATCCTCCCAGCAAAGAATTGGATGCCAAGATAAGGGATGAGGAAGCTAGAAGACAAGGAGCAGTAGGAAGCAAGGGACACCGACTTGACCTGCAAAGGAAAAATGGTGAGTCTCGAGCCGTCCCTGCACCTGATGCCAATGCCGAGTTAGCCTCATCAATGCAGAAACGACAAGGTCAGTTCAATTCGAAGAGCCGGAGTGAGAAGTTTAACCCACATCTAGAAGAAGCGTCGGGTTTTCCTATCGATCCACCTAGACCTTCACAAGGAGCAGAAAGAATGGATTCTCACGTGCGTCATCCTAAGAAAGCCTCACATTCAGGGCCACTTGCTCAGCGGGCTGCTTGGGCAAAGGCTAGTAAGAACTCCGATGACGCTCCCAAAATGTCAACCGGGGCCGAAACGTTCGCAACTTCAGGACTAGTTGCAGCTAGAAGAAGTGTGTTGGCTGAAGATTGCAGGGAAAAGCCTGACTCTTCACAAGGAGAGGTTAAAAAACTAATTGGCAGGTTTCCCGGTTCCTTCAAAGAAACCTCGGAGTCGTCGATGCTACCGGGCCAGAAGTTCTCAAATCACAGTATTGTAGGCTCACATGACAAAGAGAGAAGCAGCACCAAAGACCCTATAGTTCCAGTAAAGCTGAGCTATTTGCTCTTGCCATGGTTTTCTGAGTGTCTGTTCATGTACATAATACTAATACAACAGGTGGGTTATGGCTCAAACGGTCATAAGATTCACTACTCTGGTCCATTACTGGTTCCCTCAAGCAACATGGACCAAATGTTTAAGGACCACGATCGCCATATCCAAGAAGCAGTAAGACGAGCTCGGCTCGACAAGGCAAAGGCACGGAAGATTCAAGCGGACGGGAAACAGATGTCAGCCAATTCATTATTCGTCTCCGGTCATTAA 2199 47.02 MGSVCCKPSAIEDSKESPRERLSSKTSSDLRVARVTSSTREEVYRSKDQHDGNDARVMLIDKQVNGSGRMQGENFERKREKMEHMGAQHPSMGRIPKAAEGDHVAAGWPPWLAAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGVKFTEAQVKCYMQQLLRGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLASLFDIHQNQPLTSRVVTLWYRPPELLLGATYYGIAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSRLPHATIFKPQQPYRRCVADTFKDFPAPALALIETLLSVDPADRGSAALALKSEFFSTKPLPCDSSSLPKYPPSKELDAKIRDEEARRQGAVGSKGHRLDLQRKNGESRAVPAPDANAELASSMQKRQGQFNSKSRSEKFNPHLEEASGFPIDPPRPSQGAERMDSHVRHPKKASHSGPLAQRAAWAKASKNSDDAPKMSTGAETFATSGLVAARRSVLAEDCREKPDSSQGEVKKLIGRFPGSFKETSESSMLPGQKFSNHSIVGSHDKERSSTKDPIVPVKLSYLLLPWFSECLFMYIILIQQVGYGSNGHKIHYSGPLLVPSSNMDQMFKDHDRHIQEAVRRARLDKAKARKIQADGKQMSANSLFVSGH 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2044031 2048013 + CmoCh16G004300.1 Cmo16g00430 399465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00430 732 MobiDBLite consensus disorder prediction 1 52 - -
Cmo16g00430 732 MobiDBLite consensus disorder prediction 605 622 - -
Cmo16g00430 732 MobiDBLite consensus disorder prediction 12 27 - -
Cmo16g00430 732 Gene3D Transferase(Phosphotransferase) domain 1 214 454 - -
Cmo16g00430 732 MobiDBLite consensus disorder prediction 445 464 - -
Cmo16g00430 732 SUPERFAMILY Protein kinase-like (PK-like) 125 422 IPR011009 -
Cmo16g00430 732 MobiDBLite consensus disorder prediction 35 52 - -
Cmo16g00430 732 MobiDBLite consensus disorder prediction 605 634 - -
Cmo16g00430 732 PANTHER CELL DIVISION PROTEIN KINASE 1 707 - -
Cmo16g00430 732 ProSiteProfiles Protein kinase domain profile. 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00430 732 Pfam Protein kinase domain 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00430 732 SMART serkin_6 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00430 732 MobiDBLite consensus disorder prediction 445 561 - -
Cmo16g00430 732 CDD STKc_CDK9_like 131 415 - -
Cmo16g00430 732 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524
Cmo16g00430 732 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Cmo16g00430 732 Gene3D Phosphorylase Kinase; domain 1 118 213 - -
Cmo16g00430 732 PANTHER CYCLIN-DEPENDENT KINASE 1 707 - -
Cmo16g00430 732 MobiDBLite consensus disorder prediction 480 496 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00583 Cmo16g00430 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00920 Cmo-Chr6:6618306 Cmo16g00430 Cmo-Chr16:2044031 0 dispersed
Cmo09g01213 Cmo-Chr9:9362476 Cmo16g00430 Cmo-Chr16:2044031 1.02E-147 dispersed
Cmo09g01297 Cmo-Chr9:11502373 Cmo16g00430 Cmo-Chr16:2044031 0 dispersed
Cmo16g00430 Cmo-Chr16:2044031 Cmo20g00222 Cmo-Chr20:1063611 3.46E-143 dispersed
Cmo07g00794 Cmo-Chr7:3633060 Cmo16g00430 Cmo-Chr16:2044031 7.41E-145 transposed
Cmo20g00223 Cmo-Chr20:1073241 Cmo16g00430 Cmo-Chr16:2044031 1.88E-10 transposed
Cmo16g00430 Cmo-Chr16:2044031 Cmo04g00583 Cmo-Chr4:2911153 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74958 PF00069 Pkinase 3.10E-68 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00430 - - csv:101222182 1318.14