Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00433 ATGGCGATGGCTTCACCTCTGGCCGTCAATGGAGTCAAGTTGGCTACGGCTTCACCTCTGGCCGTCAATGGAGTCAAGTTGGCTACGGCTTCACCTCTGGCCGTCAATGGAGTCAAGTTGGCTACGGCTTCTCTAGCTTATGTGGACACCAAGGCTGCAAACCATACGAAGGCTCTGATGGCGGAGCTTTCCCGCCAATTCTACGGCCTCCGATTGGTTTCCGGCCCCGCCGGTTGCATTTCCATCAAGGTTCACGACCACTCCATTCCCAAGGGACAACACACAGTCGCTTTGTCGCATTCCGGTGTTAAGAAGGAGCGAATGGTAGCGGAGGACACCTGCATGTTATCTTATGGTGGGTCAATCTTATATTCACCACCTCCAAAGCCATTTTCTCACAAGCTCCCGTACTGTTTGGATGGTGGACCTCTTTTTATGAAGGATCCTTTTGGGAGCATCAAAGGAATGTCAAGCAAAATTTCTGTGAAGGCTGGGGCCCAAGGTTTAGATAATGAAAACAAACCATTGCCACGTTGCATAGTTCTTGATATCGAAGGGACTACTACACCAATATCTTTCGTTACTGACGTTCTCTTTCCATATGCTCGTGATAATGTTGGAAAGCATTTGATTTTAACGTATGAAACTGCAGAAACTCAAGATGACATTAAGTTATTGCGTTCACAAGTTGAAGAAGATTTGGAAAAGGGTGTTGCTGGAGCTGTGCCCATACCTCCTGATAATGCTGGGAAAGAGGAAGTCATTGCAGCATTGGTTGCTAATGTTGAAGCAATGATAAAAGCTGACCGCAAGATAACTGCCTTGAAACAATTGCAAGGTCACATATGGAGAACAGGATTTGCAGGGAATGAATTGGAGGGAATAGTTTTTGATGATGTGCCAGAAGCTCTTGAGAGATGGCATGCTTTGGGCATTAAGGTCTACATATACTCGAGCGGAAGCAGGTTGGCACAAAGGCTTATATTCGGAAAGACTAATTATGGTGATCTAAGAAAATACTTATCAGGATTCTTTGACACTGCTGTGGGGAACAAAAGAGAAATAAGGAGTTATGTTGAGATTTCAGAGTCTCTTGGAGTTGATACACCATCAGAGATCCTGTTCATCACAGATGTCTATCAGGAAGCTGTAGCAGCAAAAGCAGCAGGGCTGCAGGTGGCCATCTCAATCCGACCAGGAAATGGTCCACTGCCTGATGATCATGGGTTCCAGACTGCCACTTCCTTCTCAGACATCACAGCTTGA 1266 46.13 MAMASPLAVNGVKLATASPLAVNGVKLATASPLAVNGVKLATASLAYVDTKAANHTKALMAELSRQFYGLRLVSGPAGCISIKVHDHSIPKGQHTVALSHSGVKKERMVAEDTCMLSYGGSILYSPPPKPFSHKLPYCLDGGPLFMKDPFGSIKGMSSKISVKAGAQGLDNENKPLPRCIVLDIEGTTTPISFVTDVLFPYARDNVGKHLILTYETAETQDDIKLLRSQVEEDLEKGVAGAVPIPPDNAGKEEVIAALVANVEAMIKADRKITALKQLQGHIWRTGFAGNELEGIVFDDVPEALERWHALGIKVYIYSSGSRLAQRLIFGKTNYGDLRKYLSGFFDTAVGNKREIRSYVEISESLGVDTPSEILFITDVYQEAVAAKAAGLQVAISIRPGNGPLPDDHGFQTATSFSDITA 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2054272 2058682 - CmoCh16G004330.1 Cmo16g00433 399468

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00433 421 Gene3D - 191 286 - -
Cmo16g00433 421 Pfam Class II Aldolase and Adducin N-terminal domain 59 130 IPR001303 -
Cmo16g00433 421 PANTHER BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE/ENOLASE-PHOSPHATASE E1-RELATED 33 147 - -
Cmo16g00433 421 PANTHER BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE/ENOLASE-PHOSPHATASE E1-RELATED 153 419 - -
Cmo16g00433 421 Pfam haloacid dehalogenase-like hydrolase 178 390 - -
Cmo16g00433 421 CDD HAD_EP 179 400 IPR023943 GO:0000287|GO:0019509|GO:0043874
Cmo16g00433 421 Gene3D - 52 138 IPR036409 -
Cmo16g00433 421 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 153 419 IPR017714 GO:0005737|GO:0019509|GO:0046872
Cmo16g00433 421 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 33 147 IPR017714 GO:0005737|GO:0019509|GO:0046872
Cmo16g00433 421 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 178 419 - -
Cmo16g00433 421 SUPERFAMILY AraD/HMP-PK domain-like 54 130 IPR036409 -
Cmo16g00433 421 TIGRFAM enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 178 418 IPR023943 GO:0000287|GO:0019509|GO:0043874
Cmo16g00433 421 Gene3D - 287 419 IPR023214 -
Cmo16g00433 421 SFLD enolase-phosphatase 178 419 IPR023943 GO:0000287|GO:0019509|GO:0043874
Cmo16g00433 421 SUPERFAMILY HAD-like 177 419 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00433 K16054 DEP1; methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1 [EC:4.2.1.109 3.1.3.77] - csv:101221712 620.157
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01266 Cmo16g00433 CCT
Cmo01g01266 Cmo16g00433 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01266 Cmo-Chr1:10132216 Cmo16g00433 Cmo-Chr16:2054272 1.95E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g201 . . . . Bpe09g00237 . . Bma13g00947 Cmo16g00433 . Cma01g01212 . Car01g01036 . Sed04g2403 . Cpe02g00698 Bhi09g03436 Tan01g0815 . . Hepe01g1391 . . Cla11g01757 Cam11g1824 Cec11g1844 Cco11g1851 Clacu11g1984 Cmu11g1794 Cre11g2201 Cone6ag0152 Cone9ag0177 . Cone15ag1052 Lsi04g02067 Csa04g02338 Chy07g00069 . . Blo10g00760 . Bda12g00837 . . . . . Cmo01g01266 . . Cma16g00399 . Car16g00364 Cpe14g00336 . . . . . . . . . . . . . . . . . Chy06g01160 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002536 1 3 1 2 1 1 2 1 1 2 2 2 2 2 2 2 1 3 1 2 2 2 2 2 2 2 2 4 3 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00433 Cmo_Chr04 FPKM 150.592026 162.931717 118.867401 116.559219 80.49942 82.880287 87.760254 132.708466 134.425751 141.549606
Cmo16g00433 Cmo_Chr16 FPKM 129.760056 130.071167 158.76413 159.991928 98.428627 103.190025 102.896416 239.104477 241.147949 262.228577