Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00436 ATGTTATTATTCAGTTGCTTCTTTTCCTTCTCTTTGGCTCTGAAACAGCCTAATCAACTCTGTGATCCAAGAGATTTACTGGCATTGAGGGGCTTTCTGAATAGCCTTTCAAATAGTTCTGTTATCTCTGTATGGTTAAAGGAACCCAACTGCTGCATTTGGGATGGTGTCGTTTGTGGATATGATAGCAACAGCTCTATCACTAACAGAGTTACCAGGTTAGAACTGCCTAATATGAATCTGAAAGGCAAGATTTCACAATCTCTTGGTGGTTTGGATCAGTTAATTTGGCTGAATCTATCATACAATCAGCTTGAAGGTGTTTTGCCAACAGAATTCTCAAGGTTGAAGCAACTCCAGGTGTTGGATTTGAGTTACAATAAGCTGTCAGGATCAGTCACTAATGCAACTTCAGGATTGATATCTGTTCGTGTTCTTAATATTTCCAGCAATTCATTCATTGGGGATTTCCCCCAGCTAGTGGGATTTCAAAATCTTGTTGCCTTCAATATAAGTAACAATTCTTTCACAGGACAGTTTTCTTCACAGATTTGCAATTCCTCCAACATGATTCAGGTTGTTGATATTTCACTGAACCAAATATCCGGCAATCTTCAAGGAGTGAACGATTGCAGCAAATCTCTCAAACATTTCCGTGCAGATAATAACTTGCTTACTGGACATCTTCCAGAATCGTTGTATTCGTTATCGTTTTTGGAGTACTTTTCAATCCCTGTGAACAGCTTCTTTGGCCAGTTAAGCATGGAACTGAGTAAGCTTTCTAGGCTTAAATCCTTTATCGTATTCGGAAACAAGTTTTCTGGCGAACTTCCAAATGTGTTTGGTAACTTTTCAGAATTACGGGAGTTAGTTGCACATTCCAACTTGTTCTCTGGAATTCTGCCTTCATCTCTGTCATTGTGCTCAAAGCTTAGAGTTCTTGATCTTAGAAATAATTCCTTTACTGCTGCTATAGATCTCAATTTTTCTAGGCTACCAGATCTTCAAATGCTTGATCTAGCCTCTAATCACTTTTCGGGGCCTCTACCGAATTCTCTGTCTGATTGCCATGAATTGAAAACTCTTAGCCTTGCCAAGAACAAGTTAACTGGTCAAATTCCTCGTGATTATGCTAAGCTATCCTCTCTGTCCTTTCTATCTTTGTCAAACAATAGTATTATAGACTTGAGTGGTGCATTATCTATTCTACATAATTGCAAGAACCTGACTGTTCTTATTCTTACAAAGAACTTTCGTAATGAGGAAATTCCACAGAGTGAAACTGTTTTCGACAACTTGATGCTTTTGGCATTTGGTAACTGTGGCCTGAGAGGACAAATTCCAGGTTGGTTAGTAGGTTGCAAGAAATTAAGCATCCTGGATTTGTCTTGGAATCACTTAGATGGAAGTATCCCTGCTTGGATTGGTCAGCTGGAGAATTTATTTTATTTGGACTTATCCAACAACTCTCTGTCAGGAGAAATCCCAAAAAGCTTGACACAGATGAAAGCACTAATTTCCAGAAACTGCAGCTTGTCGGGTTCAACATCGTCTGCTGGAATCCCCCTTTTTGTCAAACGAAATCAAAGTTCCACTGGTTTGCAATACAACCAAGCGTCGAGCTTTCCACCATCGATTTACTTGAGCTACAACAGAATTAATGGAACTATTTGGCCAGAAATTAGTAGATTAAAAGGGCTGCATGCCTTGGATTTGAGTAGGAACAATATAACTGGGTCCATCCCAAACACCATATCGGAGATGGAGAACTTGGAAGCCTTAGATTTGTCGAATAATGATCTTTATGGACGAATTCCTCCATCACTCAAAAAGCTTACATTCTTGTCAAAGTTCAGCGTGGCAAATAATCACTTGGAGGGACCAATTCCAAATGGAGGGCAATTCTTAAGTTTTCCCAGCTCAAGCTTTGATGGTAATGCAGGACTTTGCGGGGAAATCGACAACCCTTGTCGTTCTGTTGATGGGTTAGAAAAAAGACCTGAAACCGACACTTACTCAAAGAGAAAAGTTGGGAGAAGTGTCATTCTCTGCCTTACAGTCGGAGCAGCTGCAGCAATCCTCCTGGTCCTTACAGTGGTTCTACTCAAAATGTCCAGGAAAGATGTTGGAGATCGGAATAACAGTTTTGACGAGGAATTTGACCGGCCTAACAGGTTATCTGGAGCTCTTGGATCATCAAAGTTGGTGCTCTTTCAGAATTCAGAATGCAAGGATCTTACAGTTGCAGAGTTGTTAAAAGCTACTTGCAATTTCAACCAAGCAAACATAATCGGCTGTGGTGGATTTGGCCTGGTTTACAAAGCCAGCCTTCCCAATGGTTCAAAAGCTGCAGTCAAGAGGCTTACAGGAGATTGTGGTCAGATGGAACGGGAATTCCAAGCTGAAGTAGAAGCTCTTTCTCGGGCGCAGCATAAGAACCTTGTTTCTCTTCAAGGTTACTGCAAACATGGAAACGACAGGCTATTAATTTACTCCTACATGGAAAATGGAAGTTTGGACTATTGGCTTCATGAGATTGTTGATGATGAAGATTCAATACTAAAATGGGAAGCAAGACTCAAAATCGCACAGGGTGCAGCTCATGGATTGGCTTACTTGCATAAGGAATGTCAACCAAACATAATTCACCGCGATGTCAAGTCGAGCAACATACTTCTGGATGACAAATTCGAGGCTCATTTAGCTGATTTTGGCCTTTCAAGATTACTCCGGCCATATGACACTCATGTTACCACAGACTTGGTTGGGACATTGGGTTATATTCCTCCTGAATACAGCCAGACGTTAATTGCTACTTGCCGGGGCGATGTTTACAGTTTTGGCGTTGTTCTTCTCGAGCTTCTAACTGGGCGGAGGCCTGTAGAGGTATGCAAAGGTAAAGCCTGCAGGGATCTGGTGTCATGGGTGATTCAGAAGAAATCAGAAAAGAAAGAAGAGGAGATTATTGATCCAGCAATTTGGGATACAAATAGCAAAAAACAGATTCTAGCGGTCCTTGGTATTACTTGTAAATGCATAGACCAAGATCCAAGGAAGAGACCTTCGATTGAAGAAGTTTCTTCATGGCTAGATGGTGTTACATTGTAG 3108 40.96 MLLFSCFFSFSLALKQPNQLCDPRDLLALRGFLNSLSNSSVISVWLKEPNCCIWDGVVCGYDSNSSITNRVTRLELPNMNLKGKISQSLGGLDQLIWLNLSYNQLEGVLPTEFSRLKQLQVLDLSYNKLSGSVTNATSGLISVRVLNISSNSFIGDFPQLVGFQNLVAFNISNNSFTGQFSSQICNSSNMIQVVDISLNQISGNLQGVNDCSKSLKHFRADNNLLTGHLPESLYSLSFLEYFSIPVNSFFGQLSMELSKLSRLKSFIVFGNKFSGELPNVFGNFSELRELVAHSNLFSGILPSSLSLCSKLRVLDLRNNSFTAAIDLNFSRLPDLQMLDLASNHFSGPLPNSLSDCHELKTLSLAKNKLTGQIPRDYAKLSSLSFLSLSNNSIIDLSGALSILHNCKNLTVLILTKNFRNEEIPQSETVFDNLMLLAFGNCGLRGQIPGWLVGCKKLSILDLSWNHLDGSIPAWIGQLENLFYLDLSNNSLSGEIPKSLTQMKALISRNCSLSGSTSSAGIPLFVKRNQSSTGLQYNQASSFPPSIYLSYNRINGTIWPEISRLKGLHALDLSRNNITGSIPNTISEMENLEALDLSNNDLYGRIPPSLKKLTFLSKFSVANNHLEGPIPNGGQFLSFPSSSFDGNAGLCGEIDNPCRSVDGLEKRPETDTYSKRKVGRSVILCLTVGAAAAILLVLTVVLLKMSRKDVGDRNNSFDEEFDRPNRLSGALGSSKLVLFQNSECKDLTVAELLKATCNFNQANIIGCGGFGLVYKASLPNGSKAAVKRLTGDCGQMEREFQAEVEALSRAQHKNLVSLQGYCKHGNDRLLIYSYMENGSLDYWLHEIVDDEDSILKWEARLKIAQGAAHGLAYLHKECQPNIIHRDVKSSNILLDDKFEAHLADFGLSRLLRPYDTHVTTDLVGTLGYIPPEYSQTLIATCRGDVYSFGVVLLELLTGRRPVEVCKGKACRDLVSWVIQKKSEKKEEEIIDPAIWDTNSKKQILAVLGITCKCIDQDPRKRPSIEEVSSWLDGVTL 1035
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2077034 2080141 + CmoCh16G004360.1 Cmo16g00436 399471

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00436 1035 Pfam Protein kinase domain 759 1027 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00436 1035 CDD STKc_IRAK 764 1026 - -
Cmo16g00436 1035 Gene3D Ribonuclease Inhibitor 355 662 IPR032675 -
Cmo16g00436 1035 Pfam Leucine rich repeat N-terminal domain 24 59 IPR013210 -
Cmo16g00436 1035 Gene3D Ribonuclease Inhibitor 24 137 IPR032675 -
Cmo16g00436 1035 Gene3D Ribonuclease Inhibitor 209 280 IPR032675 -
Cmo16g00436 1035 Gene3D Ribonuclease Inhibitor 138 208 IPR032675 -
Cmo16g00436 1035 Pfam Leucine Rich Repeat 480 499 IPR001611 GO:0005515
Cmo16g00436 1035 SUPERFAMILY L domain-like 241 636 - -
Cmo16g00436 1035 Pfam Leucine rich repeat 545 601 IPR001611 GO:0005515
Cmo16g00436 1035 Pfam Leucine rich repeat 310 369 IPR001611 GO:0005515
Cmo16g00436 1035 Pfam Leucine rich repeat 70 129 IPR001611 GO:0005515
Cmo16g00436 1035 ProSitePatterns Protein kinases ATP-binding region signature. 764 786 IPR017441 GO:0005524
Cmo16g00436 1035 Gene3D Transferase(Phosphotransferase) domain 1 834 1034 - -
Cmo16g00436 1035 ProSiteProfiles Protein kinase domain profile. 758 1030 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00436 1035 PRINTS Leucine-rich repeat signature 119 132 - -
Cmo16g00436 1035 PRINTS Leucine-rich repeat signature 588 601 - -
Cmo16g00436 1035 SUPERFAMILY Protein kinase-like (PK-like) 739 1030 IPR011009 -
Cmo16g00436 1035 ProSitePatterns Serine/Threonine protein kinases active-site signature. 881 893 IPR008271 GO:0004672|GO:0006468
Cmo16g00436 1035 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 547 603 - -
Cmo16g00436 1035 SUPERFAMILY L domain-like 20 290 - -
Cmo16g00436 1035 SMART LRR_typ_2 478 502 IPR003591 -
Cmo16g00436 1035 SMART LRR_typ_2 92 115 IPR003591 -
Cmo16g00436 1035 SMART LRR_typ_2 588 612 IPR003591 -
Cmo16g00436 1035 SMART LRR_typ_2 116 139 IPR003591 -
Cmo16g00436 1035 SMART LRR_typ_2 380 403 IPR003591 -
Cmo16g00436 1035 SMART LRR_typ_2 332 356 IPR003591 -
Cmo16g00436 1035 SMART LRR_typ_2 564 587 IPR003591 -
Cmo16g00436 1035 Gene3D Ribonuclease Inhibitor 281 354 IPR032675 -
Cmo16g00436 1035 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 23 426 - -
Cmo16g00436 1035 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 435 503 - -
Cmo16g00436 1035 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 600 1032 - -
Cmo16g00436 1035 PANTHER PHYTOSULFOKINE RECEPTOR 2 23 426 - -
Cmo16g00436 1035 PANTHER PHYTOSULFOKINE RECEPTOR 2 547 603 - -
Cmo16g00436 1035 PANTHER PHYTOSULFOKINE RECEPTOR 2 435 503 - -
Cmo16g00436 1035 PANTHER PHYTOSULFOKINE RECEPTOR 2 600 1032 - -
Cmo16g00436 1035 Gene3D Phosphorylase Kinase; domain 1 726 833 - -
Cmo16g00436 1035 SMART serkin_6 758 1030 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00436 - - - cmo:103496072 1837.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00003 Cmo-Chr4:10055 Cmo16g00436 Cmo-Chr16:2077034 0 dispersed
Cmo08g00566 Cmo-Chr8:3469115 Cmo16g00436 Cmo-Chr16:2077034 0 dispersed
Cmo15g00899 Cmo-Chr15:4534552 Cmo16g00436 Cmo-Chr16:2077034 4.45E-142 dispersed
Cmo16g00436 Cmo-Chr16:2077034 Cmo16g00143 Cmo-Chr16:650920 7.48E-10 dispersed
Cmo16g00436 Cmo-Chr16:2077034 Cmo18g01258 Cmo-Chr18:12320265 2.93E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g193 . . . . Bpe09g00240 . . Bma13g00942 Cmo16g00436 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0157 Cone9ag0181 Cone14ag1058 . . . . . . Blo10g00752 . . . . . . . . . . Cma16g00736 . Car16g00368 Cpe14g00338 . . . . . . . . Cla05g01002 . . . . . . . . Chy06g01163 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011381 0 1 1 1 1 0 1 0 0 1 1 0 1 1 0 1 0 0 1 0 1 0 0 0 0 1 0 0 0 1 14
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74959 PF00069 Pkinase 1.50E-43 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00436 Cmo_Chr16 FPKM 0.0 0.0 0.0 0.0 8.438714 7.029878 8.053076 0.0 0.0 0.0