Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00439 ATGGCGACTCGGGGAGAATCTAGGAGTTGGAAAGTCCTGTTGTTGATTTCTAGGGCAGATTACTGGTCTAGGACGACGTTTGCGCTATTAATTTTATTTGTGATTTTTGTCATGCGAGTTTCATCGGGTTCAGTTTCGTCGTCATTGAAGCAGAGTGACAATCGGTCTGGGTCTAGGCTTAAGAAGAAGCACAAAAGGCTTGATGCCATATGCGAAAAAGAGTATAGTCGAAACCATGGAGATGTGAATGAGAATGGCAGTGGATTGGGGATTGTGGAGGCTGACCTTGGGCTTCGGCGGAGCAGCCGTGTCCGTAGGGCCCCAGTCTTGCTCGATGCTTCCCCTATGCCAAAGAAGAAGCGGCGGAAGGTTCATGGGAATGAAACTTCGGGCGTTAAGACGAGTGCTAACTCTCTGCCTCAGTTGAGCGATGAACTGAATGATGAGAAGCCTGACAATTGGAGATCAAGGTTGAGATCAGGGAACAGAAATTTGGGGATTAGAGTGGAAAAAGGAACTCGGGCAAGCAGGAAAAGAAAACTTTTTGATGAAATTGTAGATGTGGAAGTAAAAAGTAGTGGAATGAGGAGATTTGGAGTGACAAATGATCAAATTAACATAGAGAAAGAGGTGAAATCTCCTAAAATTAAGGATGGTTGTTGCAGGGAAGACATCTTGGATATCGATAACGAAGATGATGATGAGGAGGAGGAGGCTGAGGAGTGGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTAGAAGAAGAAGGGGAGGAGGAAGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGTGGAGGGCAAGGAAGCCATTACTGCAAAGAATGAGAGAGAGGACGTTTTGCCTTTGGAAAATGAAATGGATGACAAAAATGTGAAAGCAGTGGATGATGTTGTTCCTGAGGTTGTTGAAAAATTGGACAAAGAAACTTCGAGTTCTTTTCATGTAGATGAGGCTTGTAGCGTCGATCACAATGAAGAACCAGCCAATGTGGTGGAGAATTCAAACAACGGTGAGATACCGCTGGAAGAAGTAACACGACTAAATGAAGGCATAAATGAAATTCATGATGTAGAAGCTGCTGTAGTTTCAGCAAATGAAGTGGTAGGTGGAAGGCATTGCGACGAGAAAGCTATTGATTTGGGAAAGTTTACTGAAAAGTCTAGGCAACATAGTGGTGATTTAAATTTAAAGAAGTTTACAGACAGTTCCACAGGTATGTTGGGTAAGGCTCGCATTAAAGAGGGCAGAAGGTGTGGATTGTGTGGAGGAGGAATTGATGGTAAACCTCCAAAGAAGTTAGTTCAGGATTCGGGTGAGAGTGAAAATGAAGCTTGTAGTGGTTCTTCAGCTTCAGAGGAACCAAATTATGACAAGTGGGATGGTTTTGGTGATGAACCTGGATGGCTTGGACGCCTATTAGGTCCTATTAATGATCGTTATGGCATTGCTGGAATATGGGTCCATCAACACTGTGCAGTTTGGAGCCCCGAGGTTTATTTTGCTGGATTGGGATGCTTGAAAAATGTAAGGGCTGCTCTTTGCAGGGGAAGAGCATTAAAGTGCACTCGGTGTGGGAGACCTGGCGCAACCATCGGATGTCGTGTTGATCGATGCCCAAGAACTTACCACTTGCCTTGTGCACGTGCTAATGGTTGCATATTTGATCACCGGAAATTTCTCATAGCTTGCACAGATCATCGCCACATCTTCCAACCTCATGGAAATCAATATTTAGCTCGGATAAAGAGATTGAAGGCCAAGAAAATGAAACTGGAAATAAAAAAGCAATCAAATGATGCTTGGCGAAGGGATATTGAGGCTGAAGAAAAGTGGTTGGAGAATTGCGGGGAGGATGAAGAGTTTTTGAAAAGAGAGAGTAAGAGACTTCATCGAGATTTGGTGAGAATTGCACCTGTATATATTGGTGGCTCAAACTCAGAAGGAGAGAACTTATATCGTGGTTGGGAGTCTGTTGCTGGGCTTCAAGGTGTCATCCAATGTATGAAGGAAGTAGTATTCTTACCACTCTTGTATCCTGAGCTTTTCGATCGCTTTGGGATTACACCTCCTAGAGGTGTTCTGTTGCATGGATATCCTGGAACTGGTAAAACACATGTTGTGCGAGCACTAATAGGTTCTTGTGCTCGTGGTGATAAACGAATTGCATATTTTGCTCGTAAAGGAGCTGATTGCTTAGGGAAATATGTTGGTGATGCAGAACGTCAGTTAAGACTTCTATTTCAAGTTGCAGAGAAATGCCAACCTTCTATTATATTTTTTGATGAGATAGATGGGTTGGCACCTTGTCGCACAAGGCAGCAAGATCAAACCCATAATTCAGTTGTGTCTACATTACTTGCTCTATTAGATGGTCTAAAATCTCGGGGGTCTGTCGTAGTTATTGGTGCAACAAATCGCCCTGAGGCAGTTGATCCAGCATTAAGGAGGCCTGGGAGGTTTGACCGTGAGATTTATTTTCCTTTGCCATCGGTTGAGGATAGGGCTGCTATTCTCTCCCTTCACACTCAAAGGTGGCCAAAGCCAGTTGAGGGACCCTTGCTCCAGTGGATTGCAAGAAGGACTGCAGGCTTTGCTGGTGCTGATCTTCAGGCTCTCTGTACTCAAGCAGCCATGAGTGCTTTGAAAAGAAATTTTCCTCTTAAAAAAGTTCTATCAGCTTCTGGGGAACAAGCTTCGAGAGATAACTGCCCTCCTCTCCCTTCCATTTTAGTGGAGGAGCGGGATTGGTTAGAAGCTCTATTATATTCTCCACCTCCATGCTCACGTAGAGAAGCAGGGATGGCTGCTAATGATGTGGCATCCTCTCCTCTTCCCTCCCATCTCATTCCTTGTCTACTTCAACCACTGTCAACTTTACTCGTTTCCCTTTATCTTGATGAACGCATCAGCTTGCCAGCTAATCTTTTAAAAGCTGCAACTTTAATCAAAAGTGTGATTGTTACTGCTTTGGATGGAAGGAAAATTGTCACTAGTTGCTGGTGGTCTTATGTTCACGATTTTCTTCAGGATGCTGATGTTGCAAATGAGATAGAGATAAAGCTGCAGGGTTCTGGAGTGTTACTTGAGGAATCTACTTTTGTTGGTTCTGGTGTTCTCAACAAGGAAACAGGCAATGATAGTTCCAAGTTTGAAAGTGTAGGTCATCGTGGTGGCCCACCCACTACTATGGTAGAGTCACCATTCACCTTGGAAAATAAGTCTGGCTTCCGTATTTTGATTGCTGGGAATCCCAGATCTGGACCAAGGCATCTTGCTTCTTGTCTTCTTCACTGTTATATTCAACATGTTGAAATTCGTAAGGTTGATATAGCTACAATTTCACAAGAAGGTCATGGTGATTTGGTGCAAGGCATATCACAAATATTATTGAATTGCTCTAGCATGGGATCGTGCCTTTTGTTCATGCCAAGAATTGATTTGTGGGCTATTGAATCACAAAATCAAACATCTGAGGAGTGCGGTTTCTATCTGAATGAGGAACAGTACCCCAAGGATGGAATTATTGTCAAAGACGGTCTCCTTGGTGGAAGAGAAAACCATAGTTATTCAGACCAAAGCAAATCAACCAAGAGGACCGGACTTCAAGACGAATCTCTCTCTAGTGCTTCATATGCTTGGAGTTCATTTGTTGAGCAAGTTGAATCTCTATCTACACCCTTGATGATTTTGGCCACATCAGAAGTTCCATTTTTGCTACTTCCACAAGAGATAAGGCGGTTCTTCAGAAATGACTTGTCAATTTGTCGGCCAACTACTACAGAGCATTCAGTACCTAGATTCTCTGTGCAGATTGATGGAGGTTTTGACCATGACATGGTAATCAATCAGTCTGCTACAGAATTATCAAGGGACATACTGAAACTTCTTGTTCATTTGATTCACCAAAAGGCCCACACTAAAACATCTATTTGCACAAAGAACGAGCTTTCTGTTACCCAAGATGAGAGTAATGCTGCAGATCAGCGAATAGATAAAGAAACTGCCAGCGAGCACACTGGAGAAAAGAAGTCCCCTGATGTGTCTTCTGTTAGAATTGTACCACTACCTGGCAGTAGAACCATGAGAGTGAAATCAAACTTGAGTTCAGTAATATCTACTTTTGGGTATCAGATTCTGCGATACCCCCATTTCGCCGAGCTTTGTTGGGTGACATCAAAATTGAAAGAAGGCCCCTCTGCAGATGTTAGTGGACCCTGGAAGGGATGGCCGTTCAATTCTTGTATCGTTCGCCCGATGAATGCTTTGGAGAAGGTAGCATCAAGCAGCACGAGTAATGGAAAATCTAAGGAAATTTCGGGTATGGTAAGAGGCTTGATTGCTGTTGGTTTATCAGCGATCAGAGGTGCCTACACATCATTAAGGAAAGTCTCCTTTGATGTGCGATTGGTACTCGACCTCTTAGTTGAACAGATAAATGCAAAAATTAATTCTGGGAAAGACCGGTATCAATATTTTCGCCTTCTATCACAAGTTGCATATCTGGAAGACGTTGTTAATAGCTGGGTCTTCACTCTGCACAGCTTGGAACAGGACTCGAAAAATATTGAAACATCAACGAATCATGCTTCTGGTGGTAACGAGATTTCGTGTGAGAAAAACGAACCCATTATATCCAACGAGGGCTGTCTTACACATGAAATTCCAGAAGAAAGTTGTCAGGAACCTGTTGATGAGGAAAAAGTTGTACGTATTGATTCCTTGGTAGATGGTGATTTGAATCAGTCTAATTCCCAGGATACAACATTCATATCAGGAGGACATGGAGATGGGAATTTCTGCAGTCAGTCAGTCTCCAACCAGTCCCATGACATTGCTGCTGATGACGACGACCAGTTAACTGATAATATTCCACTGAATGAGACGACTGTTGTTGCACCGGATGATTTGGAGGACAATAGAAACGACACATCGGTTAAAGCGCCTTCAAATTTAGGAACGGAATCAGTTTTTGAGTTGGAAGATCATCATCATCATCATCATCATCAAAATTCAAGTGAGGTATGTGCTGATGAAATCCCTAGCTGCACAAAACCCTGCAACTATAGTAATGGGTGTTGCACCTTAGAAAATGGTTGCAAATGTGATGGTTGTAAGCCCGACACAGACACGAATGACCGTGAAGTGAATGTTCACTCATCTCCCAGCAGAAGTGACCTCTCAACTAGCTCTGCACAAGTATGTTCTATTCGGTGCTGCACTGGTTGTTTAAACATCCTCTACGGTGCAACAAGAACCATTCTTCAGAACGAACTCGGATCAAATTGGAATAATTGGACTGCGGAGGACGTTCATGACATTGTTGCAGCGCTCTCAGTCGACCTTCTTGCAGCAGTAAGACGGGCATTTCTTGATGGAAACGACACTCGTGTATTTAACGATAGACGAAAGGCCTCAGACTCGAGAACTTGTGATTGCAAAAGTTGGAAAGACATGGTTTTTATGGCAGTGGAATGTATTTGTCACTGTGAGAAGGAAAGTTGGAGTGAAAAGGTAAGTCCCTCTCCTTGTTCTGATATGGGGCTTGAACCAAACTTTATATTCAGAGATGGTGTATTGGTTAGCCAAGATCCCAATAGGAATGTTCCGTTTCACTGTAAATTGGAGACTTTGTGCCTCTGTTCTCTTGCAGAGTTGATAGTAATGGCAAATGAGCCTTTAAATGGATAA 5775 43.2 MATRGESRSWKVLLLISRADYWSRTTFALLILFVIFVMRVSSGSVSSSLKQSDNRSGSRLKKKHKRLDAICEKEYSRNHGDVNENGSGLGIVEADLGLRRSSRVRRAPVLLDASPMPKKKRRKVHGNETSGVKTSANSLPQLSDELNDEKPDNWRSRLRSGNRNLGIRVEKGTRASRKRKLFDEIVDVEVKSSGMRRFGVTNDQINIEKEVKSPKIKDGCCREDILDIDNEDDDEEEEAEEWEEEEEEEEEEEEEEVEEEGEEEEEEEEEEEEEEEEEEGEEEEEEEEEEEVVEGKEAITAKNEREDVLPLENEMDDKNVKAVDDVVPEVVEKLDKETSSSFHVDEACSVDHNEEPANVVENSNNGEIPLEEVTRLNEGINEIHDVEAAVVSANEVVGGRHCDEKAIDLGKFTEKSRQHSGDLNLKKFTDSSTGMLGKARIKEGRRCGLCGGGIDGKPPKKLVQDSGESENEACSGSSASEEPNYDKWDGFGDEPGWLGRLLGPINDRYGIAGIWVHQHCAVWSPEVYFAGLGCLKNVRAALCRGRALKCTRCGRPGATIGCRVDRCPRTYHLPCARANGCIFDHRKFLIACTDHRHIFQPHGNQYLARIKRLKAKKMKLEIKKQSNDAWRRDIEAEEKWLENCGEDEEFLKRESKRLHRDLVRIAPVYIGGSNSEGENLYRGWESVAGLQGVIQCMKEVVFLPLLYPELFDRFGITPPRGVLLHGYPGTGKTHVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHNSVVSTLLALLDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSVEDRAAILSLHTQRWPKPVEGPLLQWIARRTAGFAGADLQALCTQAAMSALKRNFPLKKVLSASGEQASRDNCPPLPSILVEERDWLEALLYSPPPCSRREAGMAANDVASSPLPSHLIPCLLQPLSTLLVSLYLDERISLPANLLKAATLIKSVIVTALDGRKIVTSCWWSYVHDFLQDADVANEIEIKLQGSGVLLEESTFVGSGVLNKETGNDSSKFESVGHRGGPPTTMVESPFTLENKSGFRILIAGNPRSGPRHLASCLLHCYIQHVEIRKVDIATISQEGHGDLVQGISQILLNCSSMGSCLLFMPRIDLWAIESQNQTSEECGFYLNEEQYPKDGIIVKDGLLGGRENHSYSDQSKSTKRTGLQDESLSSASYAWSSFVEQVESLSTPLMILATSEVPFLLLPQEIRRFFRNDLSICRPTTTEHSVPRFSVQIDGGFDHDMVINQSATELSRDILKLLVHLIHQKAHTKTSICTKNELSVTQDESNAADQRIDKETASEHTGEKKSPDVSSVRIVPLPGSRTMRVKSNLSSVISTFGYQILRYPHFAELCWVTSKLKEGPSADVSGPWKGWPFNSCIVRPMNALEKVASSSTSNGKSKEISGMVRGLIAVGLSAIRGAYTSLRKVSFDVRLVLDLLVEQINAKINSGKDRYQYFRLLSQVAYLEDVVNSWVFTLHSLEQDSKNIETSTNHASGGNEISCEKNEPIISNEGCLTHEIPEESCQEPVDEEKVVRIDSLVDGDLNQSNSQDTTFISGGHGDGNFCSQSVSNQSHDIAADDDDQLTDNIPLNETTVVAPDDLEDNRNDTSVKAPSNLGTESVFELEDHHHHHHHQNSSEVCADEIPSCTKPCNYSNGCCTLENGCKCDGCKPDTDTNDREVNVHSSPSRSDLSTSSAQVCSIRCCTGCLNILYGATRTILQNELGSNWNNWTAEDVHDIVAALSVDLLAAVRRAFLDGNDTRVFNDRRKASDSRTCDCKSWKDMVFMAVECICHCEKESWSEKVSPSPCSDMGLEPNFIFRDGVLVSQDPNRNVPFHCKLETLCLCSLAELIVMANEPLNG 1924
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2089973 2100383 + CmoCh16G004390.1 Cmo16g00439 399474

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00439 1924 MobiDBLite consensus disorder prediction 107 159 - -
Cmo16g00439 1924 MobiDBLite consensus disorder prediction 1354 1374 - -
Cmo16g00439 1924 SMART AAA_5 718 859 IPR003593 -
Cmo16g00439 1924 Gene3D - 858 950 - -
Cmo16g00439 1924 MobiDBLite consensus disorder prediction 460 486 - -
Cmo16g00439 1924 PANTHER AAA DOMAIN-CONTAINING 95 1918 IPR045199 -
Cmo16g00439 1924 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 95 1918 - -
Cmo16g00439 1924 Pfam PHD-like zinc-binding domain 517 596 - -
Cmo16g00439 1924 MobiDBLite consensus disorder prediction 1074 1093 - -
Cmo16g00439 1924 CDD AAA 718 857 - -
Cmo16g00439 1924 Pfam ATPase family associated with various cellular activities (AAA) 722 857 IPR003959 GO:0005524|GO:0016887
Cmo16g00439 1924 MobiDBLite consensus disorder prediction 218 323 - -
Cmo16g00439 1924 MobiDBLite consensus disorder prediction 1350 1380 - -
Cmo16g00439 1924 Coils Coil 225 293 - -
Cmo16g00439 1924 Gene3D - 683 951 IPR027417 -
Cmo16g00439 1924 ProSitePatterns AAA-protein family signature. 827 845 IPR003960 GO:0005524|GO:0016887
Cmo16g00439 1924 ProSiteProfiles Extended PHD (ePHD) domain profile. 476 596 IPR034732 -
Cmo16g00439 1924 MobiDBLite consensus disorder prediction 129 144 - -
Cmo16g00439 1924 Pfam AAA+ lid domain 883 915 IPR041569 -
Cmo16g00439 1924 MobiDBLite consensus disorder prediction 295 323 - -
Cmo16g00439 1924 MobiDBLite consensus disorder prediction 225 294 - -
Cmo16g00439 1924 MobiDBLite consensus disorder prediction 468 482 - -
Cmo16g00439 1924 MobiDBLite consensus disorder prediction 46 65 - -
Cmo16g00439 1924 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 498 598 IPR013083 -
Cmo16g00439 1924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 684 913 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00439 - - - csv:101208571 2677.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00210 Cmo-Chr8:1239724 Cmo16g00439 Cmo-Chr16:2089973 3.57E-81 dispersed
Cmo16g00439 Cmo-Chr16:2089973 Cmo07g00933 Cmo-Chr7:4484293 1.58E-38 dispersed
Cmo19g00120 Cmo-Chr19:708099 Cmo16g00439 Cmo-Chr16:2089973 2.09E-14 dispersed
Cmo16g00439 Cmo-Chr16:2089973 Cmo06g00381 Cmo-Chr6:1853732 1.30E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g170 . . . . Bpe09g00245 . . Bma13g00940 Cmo16g00439 . . . . . . . . . . . . . . . Cla10g00660 Cam10g0656 Cec10g0680 Cco10g0652 Clacu10g0679 Cmu10g1503 Cre10g0883 . . Cone14ag1047 Cone15ag1035 . . . . . Blo10g00749 . Bda12g00871 . . . . . . . . Cma16g00407 . Car16g00371 Cpe14g00341 . . . . . . . . Cla05g00998 Cam05g1089 Cec05g1097 Cco05g1091 Clacu05g1083 Cmu05g1033 Cre05g1108 . . Chy06g01166 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002378 1 1 1 1 1 2 1 2 3 1 2 2 1 1 3 1 2 2 1 2 3 3 2 2 7 2 1 5 3 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00439 Cmo_Chr16 FPKM 0.0 0.0 0.0 0.0 4.180063 4.201009 5.576859 20.704199 19.704693 21.099094