Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00440 ATGGATTCTGACCGCCATTTTCGTACTACTCGCAGCAATAGTTCTAGTTCCGCCGCCGCCGCCGCAGGCTCTAGCGAGCTCTTCATCTGCTTCACTTCTCGCTTCTCATCTTCTTCTTCTGCCATGAAGATCTCTTCCAAGTGCCTTCTCAGCCCTGGCCGCGCCCGTGAAGGCCAAATCACCCTCTCTACTTCACTCAGCCGCCGTCTCAAATCCAGTGGCAGCCTCAAGGTCGGTCAGGCCTCGCCTGCGTTTCCTACCGGTGGGAAGAAGCGAGGATGCGCATTCGATAATCCGGAGCCGTCGTCGCCGAAGGTCACTTGTATTGGACAGGTTAGGGTTAAGACCAAGAAGCAGGGAAGGAAGATGAGGGCTAGATCGCTGAAGCGGAGGACTAATTCGGAGGCGAGTTTTCGGAAATCGGAGAGTGTTGTTCAATCGTCGCAGATGAATGGTAATGATCAGCAATTCGTTGCGAATCAATCGTCGCATCATAATCTTCTTCGTCAGGACAGTATGAGTAATGGCGGAAACGGTTTCCAGCAGGAGCGGCATTCGCACCGGAATCAGCGGTGGGTGCATTTGCCGTTCACAATTTGCGAGGCGCTTAGGGCTTTTGGTGCAGAACTCAACTGTTTCTTGCCGTGCCATTCGTCGTGTTCCAGCGATAGGGAAAGTAACAAGGAATCGAAGGCGGCGGGGAGGTCGGAGGAGGAGACCGAGAGTTCCTGCGGGAAAGTGTTTGCGCGGTGGTTGGTGGCGGTACAAGACAGAGACGGGAAGGGGAGGAAGATCGAACTAGTAGTCGGAGACGAAGAACCTCAAACGGAGAAGGAAAATGGAAGCCAGAGACGGCATATTTTCGACGGAATGAATTTCAAAGACGAAAATGAAGTCGTTGAGAAAGACGAATCGAGGATCAGCATTTGCATTCCGCCGAAGAACGCTTTGCTGCTAATGAGGTGCAGATCTGATCCGGTGAAGGTGGCGGAGCTCGCGAAACGATTCTGTGAACCTCCTACGCCAAAACTGGAAGAACATGACAAGGAAGAACTAGACGAAGATCATGAAGAGAAGAAAACTACACAAAATGAAGCGAAAAGAGATGAATCTGTGCCTGTAAGTAAGGAAGACGACGAAGAAGAAAGAACAGTGAAGCTAAATCTGAAGCTTGAAAGCGAGGAAGAAATCAGTGAAGAATCTGTTTCCGATACTGAAAGAGGAGAAGAATCCACAGAAATGGCCGCAGAAAACGAAATCGACGAGCAGAAATCAAACATTTCTATGATAAATCATCAGAGTCAAGAAGAAACAGTGGAAGACAGAATCGATCAAGAAAATCAGCAAGAAACAATGGCGATCTCAAGAACAATTCCAATTCCGATTCAGAGCCACTGTGAATCTGAATTTGCTCAAGATGCAGAGAACCTGGAATCAGCCGAAGAAGACGAATCTAAGCGCGAACAAGACAACAGAACAGAGCAGAGAGAAGCATTTGAAGAAGACGAAAATGGCGAAAATGGCGAAAACCCTACTTCGGCGTCATTATCATTTGAGACAGAACCAGTTTTAGACGAAACCGGAACTGAATTTGATGAGAATTGGGAAGAAGTAACAGAGACGACGATTAAAGAGAAAGCGACGGATGAAGGAATCAGATCCGACACCCAAAACGACGACGAAATGATGGGTCCAGAGGCGGAGGACCAGTCAAAGGAGCGAGAAACTCCGCCGCCGGAGCCGGAGAGAAAAACACAAACAGAATCACCTGTTCTTCCGGATTGCTTGCTATTAATGATGTACGAGCCAAAGCTATCAATGGAGGTATCGAAGGAGACGTGGGTCTGCAGCAGGGACTTCATAAGGTGCGTTCCAACGAGGGAGAAGAAGCCAGCCGGTCGAAACCCGCCGCCGCCACCGCCACCGAAGAAGCGGGAGAAGAAGCCGGCGGACAACACGCAGACGGCGGTGATCCAACCGGCGAGGTGGTCGTGTTCGTTTCCAGCGGCGGCGGCTGCGGCAACAATGATTGAACAGAAGAAGCTAGTGAGGGCCAAGGGTTACGAGCCGTTTGTTCTTACGAGGTGCAAGTCGGAGCCGATGAGGTCATCTTCTAAGCTGGCGCCGGACGCTTGCTTTTGGAAGGACCGCAAGCTTGAGCCACATCGCCCAGCTACCTTCGGCATCGGCGCGGCTGAAGTTGGATTTTGA 2211 50.66 MDSDRHFRTTRSNSSSSAAAAAGSSELFICFTSRFSSSSSAMKISSKCLLSPGRAREGQITLSTSLSRRLKSSGSLKVGQASPAFPTGGKKRGCAFDNPEPSSPKVTCIGQVRVKTKKQGRKMRARSLKRRTNSEASFRKSESVVQSSQMNGNDQQFVANQSSHHNLLRQDSMSNGGNGFQQERHSHRNQRWVHLPFTICEALRAFGAELNCFLPCHSSCSSDRESNKESKAAGRSEEETESSCGKVFARWLVAVQDRDGKGRKIELVVGDEEPQTEKENGSQRRHIFDGMNFKDENEVVEKDESRISICIPPKNALLLMRCRSDPVKVAELAKRFCEPPTPKLEEHDKEELDEDHEEKKTTQNEAKRDESVPVSKEDDEEERTVKLNLKLESEEEISEESVSDTERGEESTEMAAENEIDEQKSNISMINHQSQEETVEDRIDQENQQETMAISRTIPIPIQSHCESEFAQDAENLESAEEDESKREQDNRTEQREAFEEDENGENGENPTSASLSFETEPVLDETGTEFDENWEEVTETTIKEKATDEGIRSDTQNDDEMMGPEAEDQSKERETPPPEPERKTQTESPVLPDCLLLMMYEPKLSMEVSKETWVCSRDFIRCVPTREKKPAGRNPPPPPPPKKREKKPADNTQTAVIQPARWSCSFPAAAAAATMIEQKKLVRAKGYEPFVLTRCKSEPMRSSSKLAPDACFWKDRKLEPHRPATFGIGAAEVGF 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2102562 2104772 + CmoCh16G004400.1 Cmo16g00440 399475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00440 736 MobiDBLite consensus disorder prediction 537 582 - -
Cmo16g00440 736 PANTHER CHLOROPLAST PROTEIN HCF243 17 736 - -
Cmo16g00440 736 MobiDBLite consensus disorder prediction 459 592 - -
Cmo16g00440 736 Coils Coil 429 449 - -
Cmo16g00440 736 Coils Coil 471 497 - -
Cmo16g00440 736 MobiDBLite consensus disorder prediction 404 420 - -
Cmo16g00440 736 Coils Coil 349 369 - -
Cmo16g00440 736 MobiDBLite consensus disorder prediction 340 428 - -
Cmo16g00440 736 MobiDBLite consensus disorder prediction 340 396 - -
Cmo16g00440 736 MobiDBLite consensus disorder prediction 627 654 - -
Cmo16g00440 736 MobiDBLite consensus disorder prediction 480 499 - -
Cmo16g00440 736 MobiDBLite consensus disorder prediction 117 150 - -
Cmo16g00440 736 MobiDBLite consensus disorder prediction 508 522 - -
Cmo16g00440 736 PANTHER CHLOROPLAST PROTEIN HCF243-RELATED 17 736 - -
Cmo16g00440 736 MobiDBLite consensus disorder prediction 219 239 - -
Cmo16g00440 736 MobiDBLite consensus disorder prediction 222 239 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00440 - - - csv:101220770 954.125
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00591 Cmo16g00440 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00361 Cmo-Chr6:1749762 Cmo16g00440 Cmo-Chr16:2102562 2.23E-06 dispersed
Cmo05g00518 Cmo-Chr5:2503542 Cmo16g00440 Cmo-Chr16:2102562 1.11E-07 transposed
Cmo16g00440 Cmo-Chr16:2102562 Cmo04g00591 Cmo-Chr4:2946400 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g160 . . . Bda09g00533 . . . . Cmo16g00440 Cmo04g00591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00777 . . Bpe01g00452 Bma07g01161 . . . . Cma04g00557 Cma16g00408 Car04g00527 . . Cpe01g00500 . . . . . . . Cla05g00994 Cam05g1085 Cec05g1093 Cco05g1087 Clacu05g1079 Cmu05g1029 Cre05g1103 . . Chy06g01170 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008790 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 0 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00440 Cmo_Chr16 FPKM 34.911304 38.085903 33.397964 34.956665 34.053974 28.690067 32.579777 46.234116 43.838238 45.902584