Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00442 ATGCGAGCTCTATTGCGATGTCGCGCCTCTGAATTCGAACATGGATCGCCATTTCTCGATGGATTTAGAACCATCGTCACCACTTGCAGAGCCGTGGTTTTGCCTCACTTTGGTGGTCCGGAGGTGCTCCAGCTCCGCTCTGACGTTGACGTCCCCAACCTCAAGCCTGATGAAGTTCTCGTCCGCGCGCGTGCTGTTTCCATCAACCCGCTTGATACCCGAATGCGATCGGGTTATGGTAGCTCAATCTTTGAACCACTTTTACCGGTCATTTTGGGCCGTGATATCAGTGGTGAAGTTGCGGCTGTTGGTTCTTCGGTTCGTTCAGTAAGTGTTGGAGAAGAAGTTTTTGGTGCTTTGCATCCAACTGCTGTGAGGGGTACTTACGCTGATTACGCAATACTTTCAGCAGATGAATTAAGTGCTAAGCCAGGATCATTTACACATGTGGAAGCCAGTGCCATTCCTTTTGCTGCACTGACTGCATGGCGGGCTCTAAAAAGTACTGCTAGAATCAAAGAGGGGCAACGGGTATTAGTAATTGGCGGTGGAGGAGCTGTAGGTTATGCTGCTGTTCAGATATCAGTTGCTTCAGGCTGCCATGTTGCAACTACTTGTGGAAGTCAAAGTATAGATAAATTACTGGCAGCAGGTGCTGAGCAAGCAGTTGACTATACTACTGAGGGCATTGAATTCACACTGAAGGGGAAATTTGATGCCGTTTTGGATACAATTGGTGTGCCAGATACGGAAAGAATTGGCATCCATCTTTTGAATAGAGGTGGACACTATATGACACTTCAGGGCGAGGCTGCATCATTGACCGATAGATATGGGCTAGTTCTCGGGCTTCCTATTGCTACAAGCATACTGTTGCAGAAACAGTTACAGTACAGATGCTCCCATGGAATTGAGTACTGGTGGACGTACATGAGAGCGGATTCTGAAGGTTTAGACGAGATCAGGAGGCTATGTGAAGCTGGAAAGCTAAAGATACCGGTTGAGAAAACATTTCCGATCACACAAGTAAGGGAGGCTCATGAGGCAAAGGATAAGAACACCATTCCAGGTAAAGTGCTTTTAGCATCGAAATTGCTTTGGAACTTTACAGGATGTGAAAATTTTAACCGCGCTGGAGATTTAGTTTGCAGCCTAAGAAAGCTTGATGGCCACTCCATTTCCCAGTGCCCACCATCCATGGACCCAATCAATGCCTCTCTTCAATCTTCTCCTTCAAGTGATGTGCCGCTCATTGATGAAGCTTTGGATCGTTTAGAGCTCTGTTGGTTCTTTGATAATCTCCTTACTTGGAGGAACCCCCGGATGTCTACCTCCCGTTCTGATCCTTGTCTTTCTAATGTTGCCCATCAGGTGTTTGATGAAAGTCCTGCTGCTAATCTCTGCTCATCTGATTTGGATGGGGATGTTTCGCTGCCTAATGGTGGTGGGGTGCGTCGGAATCTGCTTCGAACGCCGTCGTTACCGTCACGTATAGATCTAGGAGGGGAGGGAATTCGAGAGAAAGGAAGTGGTTCTAGACCATTGTTGGAGCATGATGTGCTTGTTGAAACTCCTGGTGATAATGTTTGCTCGTCTGCTTTGGATATGGATGTTTCGATTGGAAATGGTGGTGGTAAACATAGGAGTCTCCTTCGAACACCGTCGTTACAGTCCCGTGTGGACCGAGAGGAAGGAATTCGAGATAAAGGAAGTGGTTCTAGGCCATTATCAGAGCATGATGTTCTTGTAGCAACTCCTGCTGATAATGTTTGCTCATCTTCTTTGGATATGGATGTTTCGATCGGAAATGGTGGTTGTAAACATAGGAGTCTCCTTCGGACACCGTCGTTACCGTCCCGTGTGGACCGAGAGGAAGGAATTCAAGAGAAAGGAAGTGGTTCTAGGCCATTAGCAGAGCATGATGTTCTTGTAGAAAGTCCTGCTGATAATGTCTGCTTATCTGCTATGGATATCAATGTTTCGCCGGGATATGGTGGTGGTAAATGTCGGAGTCTACTCCGGATGCCTTCGTTACCGTCCCGTGTGGAACGAGAACAAGGTATTCGAGAGAAAGGGAATGATTCCAAGCCATTAATAGAACATGGGTTGCTGCAAAAACCAGCCAAACCACCATATGTAGAGAGGAAAGAAGAAGGAACTCGCAGCAAAGAAAGTGGTAGCACTCGAAAGAGCAAATCCGCAAGGAAACCACGGAATGGCAATCTGCTAAGAACGCCATCGTTGCCACCATTTATAGGCAGAGAAAAGGAATTTGGAGAGAAGGAAGCTGCTGCTAGAATCAGAAACTCCATTCAACCGAACCTTTCTGAATTCTTTCCCACAAGACAAGAGATTCTTGAAAAGAACTTCAGCCTCCCGATGTGTCGAATCCCGACAAACAGCGACAGAATGTGGCACCAATTTCTCATCCAAATGAGGAAAAGAAGAAGCCAAAGTGAGCTTGAATCAGAAGAATTGCAAGGGTTCAAGGACTTGGGATTCACATTTGACAAAAAGGATATAAACCCAACAGTGGTTGACATAATTCCAGGGTTGAGAGAGAAAAAAGAGGAGGAATTAGACAGTGAAAGAACAAGAAGACCTTATCTTTCTGAAGCTTGGATGCTCCAAAATCATCTCCTCCCTCCCATCCCAAAATGGGACAGTAGAAAATCTGCTGAAGACATGAAACAACAAATCAAGTTCTGGGCTAGAGCTGTTGCTTCCAATGTGCACTAA 2739 46.15 MRALLRCRASEFEHGSPFLDGFRTIVTTCRAVVLPHFGGPEVLQLRSDVDVPNLKPDEVLVRARAVSINPLDTRMRSGYGSSIFEPLLPVILGRDISGEVAAVGSSVRSVSVGEEVFGALHPTAVRGTYADYAILSADELSAKPGSFTHVEASAIPFAALTAWRALKSTARIKEGQRVLVIGGGGAVGYAAVQISVASGCHVATTCGSQSIDKLLAAGAEQAVDYTTEGIEFTLKGKFDAVLDTIGVPDTERIGIHLLNRGGHYMTLQGEAASLTDRYGLVLGLPIATSILLQKQLQYRCSHGIEYWWTYMRADSEGLDEIRRLCEAGKLKIPVEKTFPITQVREAHEAKDKNTIPGKVLLASKLLWNFTGCENFNRAGDLVCSLRKLDGHSISQCPPSMDPINASLQSSPSSDVPLIDEALDRLELCWFFDNLLTWRNPRMSTSRSDPCLSNVAHQVFDESPAANLCSSDLDGDVSLPNGGGVRRNLLRTPSLPSRIDLGGEGIREKGSGSRPLLEHDVLVETPGDNVCSSALDMDVSIGNGGGKHRSLLRTPSLQSRVDREEGIRDKGSGSRPLSEHDVLVATPADNVCSSSLDMDVSIGNGGCKHRSLLRTPSLPSRVDREEGIQEKGSGSRPLAEHDVLVESPADNVCLSAMDINVSPGYGGGKCRSLLRMPSLPSRVEREQGIREKGNDSKPLIEHGLLQKPAKPPYVERKEEGTRSKESGSTRKSKSARKPRNGNLLRTPSLPPFIGREKEFGEKEAAARIRNSIQPNLSEFFPTRQEILEKNFSLPMCRIPTNSDRMWHQFLIQMRKRRSQSELESEELQGFKDLGFTFDKKDINPTVVDIIPGLREKKEEELDSERTRRPYLSEAWMLQNHLLPPIPKWDSRKSAEDMKQQIKFWARAVASNVH 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2110401 2119952 - CmoCh16G004420.1 Cmo16g00442 399477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00442 912 MobiDBLite consensus disorder prediction 618 636 - -
Cmo16g00442 912 MobiDBLite consensus disorder prediction 677 753 - -
Cmo16g00442 912 CDD MDR_like_2 30 361 - -
Cmo16g00442 912 MobiDBLite consensus disorder prediction 545 578 - -
Cmo16g00442 912 SMART PKS_ER_names_mod 38 361 IPR020843 GO:0016491
Cmo16g00442 912 Pfam Zinc-binding dehydrogenase 218 361 - -
Cmo16g00442 912 MobiDBLite consensus disorder prediction 610 637 - -
Cmo16g00442 912 Pfam Alcohol dehydrogenase GroES-like domain 56 118 IPR013154 -
Cmo16g00442 912 PANTHER PROTEIN AST1-RELATED 26 362 - -
Cmo16g00442 912 PANTHER PROTEIN AST1-RELATED 26 362 - -
Cmo16g00442 912 SUPERFAMILY GroES-like 25 179 IPR011032 -
Cmo16g00442 912 Gene3D - 155 333 - -
Cmo16g00442 912 MobiDBLite consensus disorder prediction 683 697 - -
Cmo16g00442 912 MobiDBLite consensus disorder prediction 557 575 - -
Cmo16g00442 912 MobiDBLite consensus disorder prediction 710 731 - -
Cmo16g00442 912 Gene3D - 37 360 - -
Cmo16g00442 912 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 148 338 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00442 K23164 RTN4IP1; reticulon-4-interacting protein 1, mitochondrial - mcha:111012857 740.725
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00615 Cmo-Chr13:6709156 Cmo16g00442 Cmo-Chr16:2110401 3.57E-14 dispersed
Cmo16g00442 Cmo-Chr16:2110401 Cmo17g01252 Cmo-Chr17:9890095 1.85E-27 dispersed
Cmo18g00406 Cmo-Chr18:2651246 Cmo16g00442 Cmo-Chr16:2110401 6.47E-17 dispersed
Cmo19g01046 Cmo-Chr19:9110792 Cmo16g00442 Cmo-Chr16:2110401 7.99E-14 dispersed
Cmo16g00442 Cmo-Chr16:2110401 Cmo15g00342 Cmo-Chr15:1590115 2.58E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g158 . . . . . . . . Cmo16g00442 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0174 Cone9ag0199 . . . . . . . . . . . . Bma07g01163 . . . . . Cma16g00410 . Car16g00374 Cpe14g00344 . . . . . . . . Cla05g00993 Cam05g1084 Cec05g1092 Cco05g1086 Clacu05g1078 Cmu05g1028 Cre05g1102 . . Chy06g01171 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010183 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00442 Cmo_Chr16 FPKM 84.691307 103.169762 117.937332 127.587746 123.289299 99.968758 118.253891 172.312347 156.533096 171.224075