Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00443 ATGGGTCGGCCTCCCAGCAATGGAGGCCCTGCCTTCCGTTTCACGGCTCCCGAGGTTGCGGAGATGGACGCTATATTGCAAGCACACAATAATACCATGCCAGCTCGGGAAGTTCTTGTTGCCCTTGCTGAGAAGTTCAGTGAATCGGTAGAACGGAAAGGGAAGATTGCTGTGCAAATGAAACAAGTTTGGAATTGGTTCCAGAATAGACGATATGCTATAAGAGCGAAGACAACCAAGGCTCCTGGAAAGTTAGCTGTCTCTCCAGTTGTCCAAATCGAGTCAACTCCCGTGAGAAATGTGCCTCAAACCACAGTTGTTCCTGCTCCTGCACCAGTAGGATCTGCAAAGAGTGCTTCAGAAAATCCATCGTTGGAGTTCGAAGCTAAGTCTGGGAGAGATGGTGCATGGTATGATGTTGCTACCTTTCTATCCCATAGATCTGTGGAAAGCGGTGACCTGTCTACTTTCTGTGCGTTTTTCATTAAAAACAAACATGAAGTACTAGTCAGATTTTCTGGTTTTGGATCGGAGGAGGACGAGTGGGTTAATATCCGAAGGAACATTAGACCTCGTTCTTTTCCTTGTGAATCATCAGAATGCGTGGCAGTTCTTCCGGGTGATCTCATCTTATGCTTTCAGGAGGGTAAAGAGCAGGCACTTTACTTTGATGCCCATGTGCTTGATACACAAAGAAGAAGACATGACGTTCGAGGTTGTCGCTGCAGGTTTTTGGTCCGTTATGATCACGATCAGTCTGAGGAAATCGTCCAGTTGAGAAAGATTTGTCGTCGGCCCGAGACTGATTACAGGTTGCAACAGCTTCATGCTGTAAATGAAGCAGCATCCACTGAGCCCTCAAAGTCTGGCGTGGATTCTGTACTGCTCAGCGGCCAGAGGATAAATTTTGAGGCAACACAAAAGCAAAATGCCAATATAAACGTCCATACCCAAACTAATACTCAGGAGGGAAGGAGTACTGAAACTAACAGTGCTCCAACCACACTCAACTCTGGTAATTCTGCAGCTAGCTCTGCATTCTCGAGTGGTATCGTGACGTCGAACTCTGTTTCTGGATTGTCGGCTGACAATGTGTCTGATGGGAAGTTACTTAGCTGA 1119 46.74 MGRPPSNGGPAFRFTAPEVAEMDAILQAHNNTMPAREVLVALAEKFSESVERKGKIAVQMKQVWNWFQNRRYAIRAKTTKAPGKLAVSPVVQIESTPVRNVPQTTVVPAPAPVGSAKSASENPSLEFEAKSGRDGAWYDVATFLSHRSVESGDLSTFCAFFIKNKHEVLVRFSGFGSEEDEWVNIRRNIRPRSFPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASTEPSKSGVDSVLLSGQRINFEATQKQNANINVHTQTNTQEGRSTETNSAPTTLNSGNSAASSAFSSGIVTSNSVSGLSADNVSDGKLLS 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2121098 2125558 - CmoCh16G004430.1 Cmo16g00443 399478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00443 372 MobiDBLite consensus disorder prediction 307 345 - -
Cmo16g00443 372 Gene3D - 10 83 - -
Cmo16g00443 372 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 334 - -
Cmo16g00443 372 Gene3D - 123 195 - -
Cmo16g00443 372 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Cmo16g00443 372 Pfam SAWADEE domain 125 263 IPR032001 GO:0003682
Cmo16g00443 372 SUPERFAMILY Homeodomain-like 4 76 IPR009057 -
Cmo16g00443 372 SMART HOX_1 7 81 IPR001356 GO:0003677
Cmo16g00443 372 Gene3D - 196 268 - -
Cmo16g00443 372 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 334 IPR039276 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00443 - - - cmo:103496064 588.186
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo09g00611 Cmo16g00443 CCT
Cmo04g00593 Cmo16g00443 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01495 Cmo-Chr1:11556825 Cmo16g00443 Cmo-Chr16:2121098 3.83E-65 dispersed
Cmo09g00611 Cmo-Chr9:3034324 Cmo16g00443 Cmo-Chr16:2121098 5.90E-61 dispersed
Cmo16g00443 Cmo-Chr16:2121098 Cmo04g00593 Cmo-Chr4:2955833 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g157 . . . . . Bpe08g01000 . . Cmo16g00443 Cmo04g00593 . . . Car09g00555 . Cpe06g00484 . . . . . . . . . . . . . . . Cone6ag0175 Cone9ag0200 Cone14ag1044 Cone15ag1033 . . . . . . . . . . Bma07g01164 . . . Cmo09g00611 Cma04g00558 Cma16g00411 Car04g00528 Car16g00375 Cpe14g00345 Cpe01g00501 . . . . . . . Cla05g00992 Cam05g1083 Cec05g1091 Cco05g1085 Clacu05g1077 Cmu05g1027 Cre05g1101 . . Chy06g01172 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006971 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 2 0 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00443 Cmo_Chr16 FPKM 158.061508 169.856384 856.514893 848.995178 261.52002 274.920563 253.459198 76.715508 73.328583 65.855888