Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00451 ATGTTGAACAATGGAGTGCGCAGCCTTCATACTTCCTGTTTGCGCTTTCCCTACGTGGCGGAGAGGCCTATTTTCCGGTCAATTTCGTACCGGGGAACTCGCCGGCGGCGACTTTTTGCGAGCTTCTGCTCTGCTTCAGCCACCGCCAATAAGGAAAGGAAGGAGAAGGTGATTGTTATATCTGGTCCGACTGGTGCTGGGAAGAGCAGGCTTGCTATGGAACTTGCTAAGCGTCTCAATGGTGAAATTATCAGCGCCGACTCTGTCCAGGTATATCAGGGTCTTGATATTGGATCTGCGAAGCCTTCTGCAAGGAATAGAAAGGAGGTTCCGCATCATCTGCTTGACATACTACGTCCATATGAAGAATATTCTGCTGGTCAGTTTTTTGAGGATGCGAGGCAAGCGACAAGATGTATCCTTGATAATGGCCGTGTTCCAATAGTTTCTGGTGGGACAGGATTGTATTTAAGATGGTTCATGTATGGCAAACCCAATGTTCCGAAGGCCACCCCAGACGTTGCTGTCAAAGTATATTCTGAGTTAGCTGACCTGCAGAAAAATGAAGACTGGGATGCAGCTGTGCAATTGGTTGTCAAAGCTGGTGATCCTAGAGCGCAGCATTTACCTACTAATGATTGGTACCGATTGCGGCGTAGCTATGAGATTGTCAAGGCAAGTGGTTTACCTCCATCTGCATTTCAAGTTCCATATGACACTTTCAGACAAGGATGTGGTTCTTGTGCAACAAGCAGCTTTCAGGATGCTGACCATTCAGTTGACTCTTCTGTTGATTCAAGTGAGGAAATTAGCTCGAAAGAGTTGGATTATGAGTTCATTTGTTTCTTCCTCTCTAGCCCAAGGCTCAATTTGTATAGGTCAATTGACTTCCGCTGTGAAGATATGATTTCAGGAAGTGATGGGATTTTATCTGAGGCAACATGGCTTCTTAATAGCGGCCTTCTTCCAGATTCAAATTCTGCCACTCGAGCTATTGGTTATAGACAAGCTATGGAGTACCTATTAAGGTGTAGGCAACAAGGTGGAAGGAGTTCTGCAGGAGAGTTCTTTGCCTTTCTCTCTGGATTTCAGAAAGCATCTAGAAATTTTGCAAAAAGGCAATTGACTTGGTTTAGGAATGAGCGGATATATCACTGGCTTGATGCTTCTAAACCCCTGGAAAATGCACTCGACTTTATTTATGATGCTTACCATAATGAAAGTGGAAATATCTCCGTTCCAGATTCACTTAGAATGGAGAAAGATATTTCCAGTCACCGAGAGGCTTCGGAACTCAAGGCTTATCGAGCGAAAAATAGATATTTTGTTAGACGTGAAGATTGTGCTGATGTTTTGGATTGGATAAAAAGAACCCAAAGTGTTTACGAAGATAATCCTGTCGCTTGA 1407 44.14 MLNNGVRSLHTSCLRFPYVAERPIFRSISYRGTRRRRLFASFCSASATANKERKEKVIVISGPTGAGKSRLAMELAKRLNGEIISADSVQVYQGLDIGSAKPSARNRKEVPHHLLDILRPYEEYSAGQFFEDARQATRCILDNGRVPIVSGGTGLYLRWFMYGKPNVPKATPDVAVKVYSELADLQKNEDWDAAVQLVVKAGDPRAQHLPTNDWYRLRRSYEIVKASGLPPSAFQVPYDTFRQGCGSCATSSFQDADHSVDSSVDSSEEISSKELDYEFICFFLSSPRLNLYRSIDFRCEDMISGSDGILSEATWLLNSGLLPDSNSATRAIGYRQAMEYLLRCRQQGGRSSAGEFFAFLSGFQKASRNFAKRQLTWFRNERIYHWLDASKPLENALDFIYDAYHNESGNISVPDSLRMEKDISSHREASELKAYRAKNRYFVRREDCADVLDWIKRTQSVYEDNPVA 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2166803 2174759 - CmoCh16G004510.1 Cmo16g00451 399486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00451 468 Hamap tRNA dimethylallyltransferase [miaA]. 57 398 IPR018022 GO:0008033
Cmo16g00451 468 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 47 460 IPR039657 -
Cmo16g00451 468 Pfam IPP transferase 90 381 - -
Cmo16g00451 468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 192 IPR027417 -
Cmo16g00451 468 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 9 47 460 - -
Cmo16g00451 468 TIGRFAM miaA: tRNA dimethylallyltransferase 57 235 IPR018022 GO:0008033
Cmo16g00451 468 Gene3D - 54 440 IPR027417 -
Cmo16g00451 468 Gene3D - 167 236 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00451 K00791 miaA, TRIT1; tRNA dimethylallyltransferase [EC:2.5.1.75] - csv:101207319 779.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00451 Cmo-Chr16:2166803 Cmo06g01441 Cmo-Chr6:10436722 1.39E-23 dispersed
Cmo16g00451 Cmo-Chr16:2166803 Cmo08g00355 Cmo-Chr8:2196219 5.52E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g135 . . Bda07g00322 . . . . . Cmo16g00451 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1033 Cone15ag1019 . . . . . . . . . . . Bma14g00258 . . . . Cma16g00419 . Car16g00384 Cpe14g00353 . . . . . . . . Cla07g00949 Cam07g1024 Cec07g1094 Cco07g1073 Clacu07g0993 Cmu07g0989 Cre07g1364 . . Chy07g00963 Cme07g01332
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008288 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00451 Cmo_Chr16 FPKM 82.040726 78.410004 44.677296 46.106445 51.261028 54.277798 49.005039 82.861237 76.306282 80.501022