Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo16g00458 | ATGAAGATTCAGTGCAATGTCTGCGAGATGGCTGAGGCGACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCTTGCGATGAGAAGATTCATGCGGCCAACAAGCTTGCAAGCAAGCACCAGAGAGTTCCTCTCTCTGATTCTTCATCTCAGATGCCCAAATGCGACATCTGCCAGGAAGCTAGTGGCTATATCTTTTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGTGATGTTGCTATACACACAGCAAATACTTATGTAACTGGTCATCAGCGCTTTCTGCTTACTGGGGTGAAAGTGGCGCTTGAGCCAACTGATCCTGTTCCTTGTTCTTCCATGCCTAAGTCACATTCTCAAGTGAAACCTACTGAGACAAAAGTTAGACCTCTGTCTGAAAGGGAATTCTCGTTGCCTTCTCCTGGTGAACTCAGCAGATGCCTGTCTGTACAAGGTGGATCTGAGGACTTTATGGCAAATGGAACGTTCCATACCGGAGATGCTGTTTCTGGTGGCTTTTCACAATGGCAAATGGATGACCTTATTAATCTGACTGGATTCAATCAGAACTATGGGTTTTTGGATAACGGATCATCCAAGGCTGATAGCGGCAAGCTCGGGGATTCTGATTCATCTCCAGTTTTAAGGGCTGCTGACATTGAGCTAGACGACAACGATGAATGCTCGGGTCAGGTTCCAGAGGCTTCCTGGACTGTGCCTCAGATTCCCTCCCCTCCTACAGCATCTGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATTTCCTGTTCTTCCGAAAAGGTTCAACATTGCTCACATAATGGTAGATTCTTGAAACGACGGAGGCAGTTCTAG | 891 | 46.91 | MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSDSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVPCSSMPKSHSQVKPTETKVRPLSEREFSLPSPGELSRCLSVQGGSEDFMANGTFHTGDAVSGGFSQWQMDDLINLTGFNQNYGFLDNGSSKADSGKLGDSDSSPVLRAADIELDDNDECSGQVPEASWTVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDISCSSEKVQHCSHNGRFLKRRRQF | 296 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 2198493 | 2202246 | - | CmoCh16G004580.1 | Cmo16g00458 | 399493 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo16g00458 | 296 | MobiDBLite | consensus disorder prediction | 115 | 129 | - | - | |
| Cmo16g00458 | 296 | SMART | bboxneu5 | 52 | 99 | IPR000315 | GO:0008270 | |
| Cmo16g00458 | 296 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
| Cmo16g00458 | 296 | ProSiteProfiles | Zinc finger B-box type profile. | 52 | 99 | IPR000315 | GO:0008270 | |
| Cmo16g00458 | 296 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
| Cmo16g00458 | 296 | Gene3D | Classic Zinc Finger | 1 | 92 | - | - | |
| Cmo16g00458 | 296 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 295 | - | - | |
| Cmo16g00458 | 296 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
| Cmo16g00458 | 296 | PANTHER | B-BOX ZINC FINGER PROTEIN 18 | 1 | 295 | - | - | |
| Cmo16g00458 | 296 | MobiDBLite | consensus disorder prediction | 113 | 145 | - | - | |
| Cmo16g00458 | 296 | CDD | Bbox1_BBX-like | 56 | 99 | - | - | |
| Cmo16g00458 | 296 | Pfam | B-box zinc finger | 53 | 95 | IPR000315 | GO:0008270 | |
| Cmo16g00458 | 296 | Pfam | B-box zinc finger | 4 | 47 | IPR000315 | GO:0008270 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo04g00707 | Cmo16g00458 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo08g00198 | Cmo-Chr8:1172012 | Cmo16g00458 | Cmo-Chr16:2198493 | 9.39E-09 | dispersed | |
| Cmo16g00458 | Cmo-Chr16:2198493 | Cmo17g00588 | Cmo-Chr17:6236889 | 8.12E-09 | dispersed | |
| Cmo16g00660 | Cmo-Chr16:3268929 | Cmo16g00458 | Cmo-Chr16:2198493 | 8.26E-06 | dispersed | |
| Cmo16g00458 | Cmo-Chr16:2198493 | Cmo04g00707 | Cmo-Chr4:3508231 | 0 | wgd | |
| Cmo16g00458 | Cmo-Chr16:2198493 | Cmo04g00707 | Cmo-Chr4:3508231 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 11268 | PF00643 | zf-B_box | 3.60E-07 | No_clan | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo16g00458 | - | - | bhj:120091143 | 560.066 |