Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00460 ATGGCTACTACACACACTCCTAAGAACATCCTCATTACTGGGGCTGCTGGATTTATTGCATCCCATGTTGCTAACAGACTTGTCAGGAACTATCCTGGCTACAAAATTGTTGTTCTTGACAAGCTTGATTATTGCTCAAATCTGAAGAATCTTCTTCCATCTAAACCATCTCCCAACTTCAAATTCGTCAAGGGAGACATTGGCAGCGCTGACCTTGTCAATTATCTCCTAATTACCGAGTCCATCGACACGATTATGCACTTTGCTGCCCAGACTCATGTTGACAACTCGTTTGGTAATAGTTTCGAGTTCACGAAGAATAACATCTATGGTACACATGTTCTTTTAGAAGCATGCAAGGTCACTGGACAGATTCGACGGTTCATCCACGTTAGTACCGATGAAGTGTATGGAGAGACAGATGAGGATGCTGTTGTGGGAAACCATGAGGCTTCTCAACTCCTCCCAACAAATCCATACTCTGCAACAAAAGCTGGAGCTGAAATGCTTGTTATGGCATATGGCAGGTCATATGGGTTACCTGTGATTACGACCCGAGGAAACAACGTATATGGACCTAATCAGTTTCCTGAGAAGCTAATTCCAAAGTTCATTCTTTTGGCAATGAGAGGCCAGTCTCTTCCAATTCATGGGGATGGTTCTAATGTTAGGAGCTACCTATACTGTGAGGATGTTGCTGAGGCTTTTGAAGTCATCCTTCACAAAGGGGAGGTTGGCCATGTTTATAACATTGGGACAAAGAAGGAGAGAAGGGTTATAGATGTTGCCCAAGACATCTGCAAACTGTTTAAAATGGACTCAGAGGCAAGCATCAAATTTGTCGAAAACAGACCGTTTAATGATCAGAGGTATTTCTTGGATGATGAGAAACTCAAGATCTTGGGATGGTCAGAACGTACGACGTGGGAAGAAGGGCTCAAGAAGACGATCGAATGGTACACCAAGAACCCTGATTGGTGGGGTGATGTCTCTGGGGCTTTGCTGCCACATCCTAGAATGCTAATGATGCCCGGTGGAGTCGAGAGGCACTTTGAAGGGTCTGAAGAGGTAGCACCGACTGCTTTCGTTTCAAGTAATACTAAGATGGTTGTCCCAACTTCCAGAAATCCAGGCTCTCCTCGCCAGTCATCCTTGAAATTTTTGATATATGGTAGGACAGGGTGGATTGGAGGCCTTCTTGGACAGCTATGTGATAAACAAGGCATTGCCTATGCATATGGCAAAGGACGTTTGGAGGATCGAGCGTCGCTTTTGGCAGATATTCAGAATATTAAACCAACCCATGTTTTCAATGCTGCTGGAGTGACAGGGAGACCCAATGTTGATTGGTGTGAATCTCACAAAACCGAAACGATTCGAGCCAATGTCGCTGGAACCTTAACTTTAGCTGATGTTTGCCGGGAGCACGGGCTCTTGATGATGAACTTTGCCACTGGCTGTATCTTTGAGTACAACGCTCAACATCCAGAGGGTTCTGGCATTGGATTTAAGGAGGAGGACAAGCCAAATTTCATTGGTTCCTTTTATTCAAAAACCAAGGCCATGGTGGAGGAGCTTCTGAAAGAATATGACAATGTCTGCACCCTCCGAGTTCGGATGCCGATATCATCCGACTTGAACAACCCACGCAACTTCATTACCAAGATTTCCCGCTACAACAAGGTCGTTAACATCCCTAACAGCATGACCATCCTGGATGAGCTTCTGCCCATTTCGATCGAGATGGCAAAGCGTAACTTGAGAGGCATCTGGAACTTCACAAACCCTGGCGTTGTGAGTCATAACGAGATCCTTGAAATGTACAAGAAATACATCGACCCCGAGTTCAAGTGGGCTAACTTCACACTGGAAGAACAGGCAAAGGTAATTGTAGCCCCTAGAAGCAACAATGAGATGGATGCTTCAAAGTTGAAAAAGGAGTTCCCAGAGCTGCTCGGGATCAAGGAGTCGTTGATCAAGTATGTCTTCGAACCGAACAAGAACAAGAAAACCTCGGCTTGA 2022 45.15 MATTHTPKNILITGAAGFIASHVANRLVRNYPGYKIVVLDKLDYCSNLKNLLPSKPSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGQSLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTKKERRVIDVAQDICKLFKMDSEASIKFVENRPFNDQRYFLDDEKLKILGWSERTTWEEGLKKTIEWYTKNPDWWGDVSGALLPHPRMLMMPGGVERHFEGSEEVAPTAFVSSNTKMVVPTSRNPGSPRQSSLKFLIYGRTGWIGGLLGQLCDKQGIAYAYGKGRLEDRASLLADIQNIKPTHVFNAAGVTGRPNVDWCESHKTETIRANVAGTLTLADVCREHGLLMMNFATGCIFEYNAQHPEGSGIGFKEEDKPNFIGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKKYIDPEFKWANFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLGIKESLIKYVFEPNKNKKTSA 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2210073 2212455 - CmoCh16G004600.1 Cmo16g00460 399495

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00460 673 Gene3D - 201 323 - -
Cmo16g00460 673 CDD dTDP_HR_like_SDR_e 386 658 - -
Cmo16g00460 673 Pfam GDP-mannose 4,6 dehydratase 11 316 IPR016040 -
Cmo16g00460 673 PANTHER BNAC05G13120D PROTEIN 1 667 - -
Cmo16g00460 673 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 333 IPR036291 -
Cmo16g00460 673 Gene3D - 378 673 - -
Cmo16g00460 673 CDD dTDP_GD_SDR_e 8 325 IPR005888 GO:0008460|GO:0009225
Cmo16g00460 673 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 1 667 - -
Cmo16g00460 673 Pfam RmlD substrate binding domain 386 556 IPR029903 -
Cmo16g00460 673 Gene3D - 10 314 - -
Cmo16g00460 673 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 380 648 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00460 K12450 RHM; UDP-glucose 4,6-dehydratase [EC:4.2.1.76] - csv:101208780 1323.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01530 Cmo-Chr2:8893555 Cmo16g00460 Cmo-Chr16:2210073 2.00E-175 dispersed
Cmo15g01253 Cmo-Chr15:8609533 Cmo16g00460 Cmo-Chr16:2210073 2.72E-176 dispersed
Cmo16g00460 Cmo-Chr16:2210073 Cmo04g00217 Cmo-Chr4:1098549 7.35E-27 dispersed
Cmo18g00510 Cmo-Chr18:3664973 Cmo16g00460 Cmo-Chr16:2210073 4.93E-25 dispersed
Cmo05g00648 Cmo-Chr5:3271742 Cmo16g00460 Cmo-Chr16:2210073 0 transposed
Cmo16g00460 Cmo-Chr16:2210073 Cmo04g00704 Cmo-Chr4:3493830 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1002 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo16g00460 . . . . Cpe14g00361 Cpe01g00592 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000921 5 5 3 5 5 2 3 2 2 2 2 2 3 2 2 3 2 5 3 2 2 3 2 1 3 2 3 8 2 0 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00460 Cmo_Chr16 FPKM 0.820448 0.656949 98.958733 105.455505 0.203337 0.190129 0.092653 2.196532 2.062157 2.079196