Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00463 ATGACGTCGGGGACGAGGCTACCAACATGGAGGGAGCGGGAGAACAACAAGAGAAGGGAGAGGAGGAGAAGAGCTATCGCAGCAAAGATCTTTGCTGGACTCAGGATGTATGGGAACTATAAGCTTCCCAAACATTGCGACAACAATGAGGTCCTTAAAGCGCTCTGCAATGAGGCGGGATGGACCGTCGAACCTGATGGTACCACTTACCGTAAGGGATGCAAGCCAATTGAACGTATGGATGTGGTTGGTGGGTCGGCAGCTGCAAGCCCGTTCGCATCTCACCAACCAAGTCCTTGTGCTTCCTTCAATCCAAGCCCCGGTTCATCTTCATTTCCAAGTCCAGCATCATCCTCATATGTTGCTAATCCAAATGCCGATGGCAGTTTTCTAATCCCCTGGCTCAGGAACCTTTCATCGTCATCATCTTCAGCATCCTCGTCTAAACTCCCCAATCTCCATATTCATGGAGGTTCCATCAGTGCTCCTGTTACTCCTCCTTTGAGTTCCCCAACTGCTAGAACGCCCCGACTCAAAGCTGACTGGGAAGACCAATCTGTCCTACCAGGATGGAATGCACAATACTATTCCTCCCTTCCATCTTCTACTCCACCAAGTCCTGGACGTCACGTTGTTCCCAATCCAGAATGGTTCGCTGGCCTTAGAATTCCTCAAGGTGGACCCAATTCTCCAACATTTAGTCTTGTTTCTACAAACCCATTTGGTTTCAAGGAAGCAGCAACGACTGGTGGAGGTTCTCGCATGTGGACCCCTGGTCAAAGTGGGACCTGCTCTCCTGCCATTGCCGCAGGCTCCGATCACACTGCAGATATTCCAATGTCAGAAGTGATCTCTGAAGAGTTCGCATTTGGAAGCAACACAGCAGGAATAGTGAAGCCATGGGAAGGAGAACGAATTCACGAGGAGTGTGGCTCAGATGACCTAGAGCTATCTCTTGGGAACTCAAGAACCAGATAA 978 50.0 MTSGTRLPTWRERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPIERMDVVGGSAAASPFASHQPSPCASFNPSPGSSSFPSPASSSYVANPNADGSFLIPWLRNLSSSSSSASSSKLPNLHIHGGSISAPVTPPLSSPTARTPRLKADWEDQSVLPGWNAQYYSSLPSSTPPSPGRHVVPNPEWFAGLRIPQGGPNSPTFSLVSTNPFGFKEAATTGGGSRMWTPGQSGTCSPAIAAGSDHTADIPMSEVISEEFAFGSNTAGIVKPWEGERIHEECGSDDLELSLGNSRTR 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2222424 2225580 - CmoCh16G004630.1 Cmo16g00463 399498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00463 325 MobiDBLite consensus disorder prediction 91 118 - -
Cmo16g00463 325 MobiDBLite consensus disorder prediction 1 20 - -
Cmo16g00463 325 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 325 IPR033264 GO:0003700|GO:0006351|GO:0009742
Cmo16g00463 325 MobiDBLite consensus disorder prediction 88 118 - -
Cmo16g00463 325 Pfam BES1/BZR1 plant transcription factor, N-terminal 3 139 IPR008540 -
Cmo16g00463 325 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 1 325 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00609 Cmo-Chr13:6674594 Cmo16g00463 Cmo-Chr16:2222424 6.95E-127 dispersed
Cmo16g00463 Cmo-Chr16:2222424 Cmo18g00412 Cmo-Chr18:2705280 5.55E-112 dispersed
Cmo16g00463 Cmo-Chr16:2222424 Cmo04g00712 Cmo-Chr4:3530555 3.31E-179 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11269 PF05687 BES1_N 1.10E-64 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00463 - - csv:101210002 575.859