Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00470 ATGGAAAATGTCCACCATTTTAGCCTCTACTACTACCCCTTTGATCTGTATAAGCATTCATGGATGTCCTATGATGATAATGATGTTGATGAACCCTCATATTCATTCATATGTTGTTTAAACACACACGGCCTCCCGCCCAATTTTGTTCTCTTCAATTTTCCCTCTCGATTTCAGACCGTCGAAACCCCATCGGAGGAACTCGGCGTTTCGATTCTCTACTGTTCGACAAATCTCACTTCTTCTGAGCTATCAAAATCCATGGTAATGAGGGAGGAAGAAATCGAGAAGCTCCGAGGCGTAGTAAGGGACTGCGTGAGCAAGCATCTCTACTCATCCGCCATTTTCTTCGCTGACAAAGTTGCCGCTTTCACTGAGGACCCTGCCGACGTTTACATGCAGGCGCAGGCCCTCTTTCTTGGCCGCCATTTTCGTCGTGCGTTTCACCTCCTTAATGCCTCCAAGATCGTCCTCCGCGATCCGCGGTTTCGCTACCTTGCTGCTAAGTGTCTTGAGGAATTGAAGGAGTGGGACCAATGCCTCATGATGCTTGGTGATGCCAAAGTGGACGAGCATGGCAATGTTCTTGATAATAAGGATCACAGTGGCATGTACCTCGACAAAGATTCCGAGGATCGTGAGATTAATATAGCCGCAGCTACATGCTTTTTAAGAGGCAAGGCATATGAAGCTCTAGAAAATCGCACTCAGGCTCGACTTTGGTATAAAGCTGCTATCAAAGCTGACCCTCTATGTTATGAGGCTTTGGAGTGCCTAATAGAAAGTCACATGCTGACTTGTGATGAAGAATCAAGTCTACTTTTATCATTGCAATTTGGTCCCGAAGATGGATGGCTATCATCATTTTATGCATGCTTAATAAAGAAGTATGATAAAGAAAATATTATTGAAGCGAGATTTAAAGAACTTGAAAGGGAAAGTTGTAATTCTGAAAGTTACGATCCATCATTTACGCGTACTTTAAAAACTAACACCGATCTTTTAGCTTGCAAAGCTGAATACTACCATCAATGTGGTGAATATCAGAAATGCTTTCAACTTACCTCTGTTCTCCTTGAAAAAGATCCATTCCATTTGAAAAGTACACTGGTACATTTAGCGGCTGCGATGGAGCTTGGACATTCGAATGAACTTTATCTAATGGCGTGCAACCTGGTCAAGGACTATCCTCAAAAGGCTTTGTCATGGTTTGCTGTCGGTTGCTATTACTACTGTATCAAAAAGTATGATCAATCGCGTCGCTATTTCAGCAAAGCCACAAGTCTGGATGGAACATTTGCACCTGCTTGGATAGGTTATGGTAACGCTTATGCTGCTCAAGAAGAGGGGGATCAAGCCATGTCTGCCTATCGCACTGGTGCTCGATTGTTTCCTGGGTGTCATTTACCAACATTGTACATTGGTATGGAATATATGCGAACTCACAGCTTCAAGCTTGCTGAGCAGTTTTTTGTGCAGGCAAAGACAATTTGTTCATCAGATCCTCTTGTTTACAATGAGCTTGGAGTTGTTGCTTATGACATGAAAGAGTACAATAAAGCAGCATGGTGGTTTGAGAAAACTCTGGCCTGTATCCCATCTCCTTTGAGTGAAATGTGGGAGCCTACTGTGGTTAATCTCGCACATTCGTACCGAAAACTAAAGATGTACCGTGAAGCAATCATGTACTATGAGAAGGCACTTGCCTTGTCAACGAGAAGCCTTAGCACTTATGCTGGTCTTGCATATACTTATCACTTGCAGGATCATTTTACTGCAGCCATTACATATTACCATAAGGCTTTGTGGCTGAAACCAGACGATCAGTTCTGCACGGAAATGTTAAGTTTAGCTCTTATGGACGAATGCCAAAATGGGATGGACCCAAAGGCAGACCTTCGGCGAAGTGAGGTCTTTGTTTAA 1923 43.27 MENVHHFSLYYYPFDLYKHSWMSYDDNDVDEPSYSFICCLNTHGLPPNFVLFNFPSRFQTVETPSEELGVSILYCSTNLTSSELSKSMVMREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAAFTEDPADVYMQAQALFLGRHFRRAFHLLNASKIVLRDPRFRYLAAKCLEELKEWDQCLMMLGDAKVDEHGNVLDNKDHSGMYLDKDSEDREINIAAATCFLRGKAYEALENRTQARLWYKAAIKADPLCYEALECLIESHMLTCDEESSLLLSLQFGPEDGWLSSFYACLIKKYDKENIIEARFKELERESCNSESYDPSFTRTLKTNTDLLACKAEYYHQCGEYQKCFQLTSVLLEKDPFHLKSTLVHLAAAMELGHSNELYLMACNLVKDYPQKALSWFAVGCYYYCIKKYDQSRRYFSKATSLDGTFAPAWIGYGNAYAAQEEGDQAMSAYRTGARLFPGCHLPTLYIGMEYMRTHSFKLAEQFFVQAKTICSSDPLVYNELGVVAYDMKEYNKAAWWFEKTLACIPSPLSEMWEPTVVNLAHSYRKLKMYREAIMYYEKALALSTRSLSTYAGLAYTYHLQDHFTAAITYYHKALWLKPDDQFCTEMLSLALMDECQNGMDPKADLRRSEVFV 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2241977 2249330 + CmoCh16G004700.1 Cmo16g00470 399505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00470 640 ProSiteProfiles TPR repeat profile. 434 467 IPR019734 GO:0005515
Cmo16g00470 640 SUPERFAMILY HCP-like 402 610 - -
Cmo16g00470 640 SUPERFAMILY TPR-like 128 264 IPR011990 GO:0005515
Cmo16g00470 640 SMART tpr_5 332 365 IPR019734 GO:0005515
Cmo16g00470 640 SMART tpr_5 575 608 IPR019734 GO:0005515
Cmo16g00470 640 SMART tpr_5 468 501 IPR019734 GO:0005515
Cmo16g00470 640 SMART tpr_5 434 467 IPR019734 GO:0005515
Cmo16g00470 640 SMART tpr_5 541 574 IPR019734 GO:0005515
Cmo16g00470 640 SMART tpr_5 502 535 IPR019734 GO:0005515
Cmo16g00470 640 SMART tpr_5 400 433 IPR019734 GO:0005515
Cmo16g00470 640 SMART tpr_5 219 252 IPR019734 GO:0005515
Cmo16g00470 640 ProSiteProfiles TPR repeat profile. 400 433 IPR019734 GO:0005515
Cmo16g00470 640 PANTHER CELL DIVISION CYCLE PROTEIN 16 HOMOLOG 95 625 - -
Cmo16g00470 640 ProSiteProfiles TPR repeat profile. 575 608 IPR019734 GO:0005515
Cmo16g00470 640 ProSiteProfiles TPR repeat profile. 502 535 IPR019734 GO:0005515
Cmo16g00470 640 Pfam Tetratricopeptide repeat 545 602 - -
Cmo16g00470 640 ProSiteProfiles TPR repeat profile. 541 574 IPR019734 GO:0005515
Cmo16g00470 640 Pfam Tetratricopeptide repeat 220 250 IPR019734 GO:0005515
Cmo16g00470 640 Gene3D Tetratricopeptide repeat domain 94 621 IPR011990 GO:0005515
Cmo16g00470 640 Pfam Anaphase-promoting complex, cyclosome, subunit 3 108 186 - -
Cmo16g00470 640 PANTHER CELL DIVISION CYCLE 16,23,27 95 625 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00470 K03353 APC6, CDC16; anaphase-promoting complex subunit 6 - csv:101217217 1083.94
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00718 Cmo16g00470 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g01089 Cmo-Chr10:6003951 Cmo16g00470 Cmo-Chr16:2241977 1.29E-09 dispersed
Cmo11g00980 Cmo-Chr11:5199732 Cmo16g00470 Cmo-Chr16:2241977 1.86E-07 dispersed
Cmo16g00470 Cmo-Chr16:2241977 Cmo04g00718 Cmo-Chr4:3565802 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g99 . . . . . . . Bma13g00927 Cmo16g00470 Cmo04g00718 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00730 . . . . . . . . . Cma04g00672 Cma16g00435 . . Cpe14g00368 Cpe01g00606 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006118 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 2 1 1 1 1 1 2 6 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00470 Cmo_Chr16 FPKM 0.0 0.659367 0.0 0.0 1.567546 0.0 1.307943 0.0 0.0 0.0