Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00475 ATGTCTCTTCGCAGATCGTTTCTCTCTCGGAAGTTTTCTTCCAAGTCGTCGTTTAGAGATCCGAATGGTGTGGAGGGAATTGTTCGAGTGGCCGTGTCGGAGGTCGAAGGTGCCTCCGGTCTGCCCGGCGGGACTGATGGCGACTTGATGCAGGGTGAATCTTCTTGGTCTTCTATGCTACCGGAGCTTCTCCGGGAGATTATTCAGCGGGTTGAGGCTTCTGAGGACGGTTGGCCCAACCGCCAAAACGTTGTTTCGTGTGCTTGTGTCTGCAAACGCTGGCGGGATATTACTAAGGAGATCGCCAGAGGTACCCCTCATTCCGGGAAGATTACTTTCCCTTCTTGCCTCAAACAGCCTGGACCAAGCGATCTTCCACATCAGTGTCTTATAAAACGGAACAAGAAGACTTCAACATTTTACCTTTACCTTGCCCTTACACCATCTCATTTAAGGGTTATTTCCCCTACTCCAGCATTTACAGATAAGGGAAAGTTCCTCTTAGCTGCACGGAGATATAGGCATGGTGCTCATACCGAGTATATAATATCTCTTGATGCTGAAGAATTATCACAAGGAAACAATGCATATGTGGGGAAGTTAAGCTCTGATTTTCTTGGCACCAATTTTACTATTTATGATAGCCAACCACCACACAATGGTGCAAAGCCATCGAGCAGTAAATCGAGCCGCCGCTTTGCAAGCAAGCAAATCAGCCCACAAGTGTCTGCAGGTAACTTCGAGGTTGGGCAAGTCTCCTACAAATTTAATCTTTTGAAATCAAGAGGTCCGAGGAGGATGATGTGCTCTCTAAAGTGCCCAGAATCAGAAGAATCTGTGACCAGCAAACCCTGCGAGAACTCGATGATGAAGAAATCTGAGTCTTTTTCTTCCTCATCAGGGTCGACAATCTTACGAAACAAGGCTCCTAGGTGGCATGAGCACCTGCAATGCTGGTGCTTGAATTTTCACGGTCGGGTGACAGTAGCATCTGTTAAAAACTTTCAACTTGTTGCTAGTATTGACCATAGCCAGCCAGGAGGAGGTAAAGGGGACGAAGAAACAGTCCTACTACAGTTCGGAAAGGTAGGCGACGATACCTTTACTATGGATTATAGACAGCCATTATCAGCTTTCCAGGCTTTCGCCATTTGCCTTACGAGCTTTGGCACGAAGTTGGCGTGCGAGTAG 1191 47.36 MSLRRSFLSRKFSSKSSFRDPNGVEGIVRVAVSEVEGASGLPGGTDGDLMQGESSWSSMLPELLREIIQRVEASEDGWPNRQNVVSCACVCKRWRDITKEIARGTPHSGKITFPSCLKQPGPSDLPHQCLIKRNKKTSTFYLYLALTPSHLRVISPTPAFTDKGKFLLAARRYRHGAHTEYIISLDAEELSQGNNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSSKSSRRFASKQISPQVSAGNFEVGQVSYKFNLLKSRGPRRMMCSLKCPESEESVTSKPCENSMMKKSESFSSSSGSTILRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVASIDHSQPGGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2271385 2275619 - CmoCh16G004750.1 Cmo16g00475 399510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00475 396 Pfam F-box domain 56 101 IPR001810 GO:0005515
Cmo16g00475 396 PRINTS Tubby superfamily signature 181 197 IPR000007 -
Cmo16g00475 396 PRINTS Tubby superfamily signature 197 221 IPR000007 -
Cmo16g00475 396 PRINTS Tubby superfamily signature 246 273 IPR000007 -
Cmo16g00475 396 PRINTS Tubby superfamily signature 305 322 IPR000007 -
Cmo16g00475 396 PRINTS Tubby superfamily signature 323 339 IPR000007 -
Cmo16g00475 396 PRINTS Tubby superfamily signature 353 372 IPR000007 -
Cmo16g00475 396 PRINTS Tubby superfamily signature 374 396 IPR000007 -
Cmo16g00475 396 SUPERFAMILY Tubby C-terminal domain-like 107 396 IPR025659 -
Cmo16g00475 396 Gene3D Tubby Protein; Chain A 112 396 IPR025659 -
Cmo16g00475 396 ProSitePatterns Tub family signature 2. 381 396 IPR018066 -
Cmo16g00475 396 ProSitePatterns Tub family signature 1. 323 336 IPR018066 -
Cmo16g00475 396 SUPERFAMILY F-box domain 53 100 IPR036047 GO:0005515
Cmo16g00475 396 Pfam Tub family 117 391 IPR000007 -
Cmo16g00475 396 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 1 396 - -
Cmo16g00475 396 MobiDBLite consensus disorder prediction 215 235 - -
Cmo16g00475 396 PANTHER TUBBY-RELATED 1 396 - -
Cmo16g00475 396 Gene3D - 51 102 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00614 Cmo16g00475 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00614 Cmo-Chr4:3057913 Cmo16g00475 Cmo-Chr16:2271385 0 dispersed
Cmo16g00475 Cmo-Chr16:2271385 Cmo04g02565 Cmo-Chr4:18784932 2.61E-126 dispersed
Cmo16g00475 Cmo-Chr16:2271385 Cmo08g01177 Cmo-Chr8:7495224 6.92E-129 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11270 PF01167 Tub 7.60E-102 CL0395 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00475 K19600 - csv:101211968 633.254