Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00476 ATGAGTAGTTTCGCATCGCCGGCCAGTGTTTGCACCTCCTTGGGATGGAAATCTTCGAGTTTTTTAGTCCATTCGGGCCTGAAATCCTCTAATTCCTCCATTAAGTTGCTTGTTTCCAGGAGGCGTGTCTCCGATAAACCTATCTCTGTTACTTGTTCATCTTCCTTATCTGATCCTCCGCTCTTGGTAAAGGCAGCAAGAGGGGATCCTGTTAGTCGCCCACCAGCATGGATGATGCGTCAAGCAGGAAGGTATATGGCCGTTTACAGAAAACTTGCAGAGAAATATCCATCTTTCAGAGAGAGATCAGAAACAACTGATCTCATTGTAGAAATTTCATTGCAGCCTTGGGAGGCTTTCCATCCTGATGGAGTTATAATTTTTTCCGACATCCTAACCCCTCTACCGGCATTTGGCGTTCCTTTTGACATAGAAGACGTACGAGGCCCTATTATTCACTCGCCTATTCGCTCCGAAGAGGGATTGAAAGCTCTTCATCCCCTTGACCTGGAGAAACTCAACTTTGTGGGGGAGTCACTTAAACTGCTACGCAAGGAGGTTGAAGGCAGTGCTGCTGTCTTGGGTTTTGTAGGAGCTCCTTGGACGATTGCAACGTATATTGTGGAAGGTGGTACGACACGAACGTATACGACGATTAAGAGAATGTGCCACACAGCACCACATGTGTTGAAGACTCTCCTCTCTCATTTGACACAGGCAATATCAGAATATATTGTTTTCCAGATAGAACATGGAGCTCATTGCATACAAATATTTGACTCGTGGGGTGGACAGTTGCCACCTGATATGTGGGAATCCTGGTCAAAGCCCTATATTCAGAAGATTGTGAGTACAGTAAGGAGCAAGTGCCCTGAAACACCGCTTGTTCTCTACATCAACGGAAATGGCGGTCTTCTAGAGCGAATGAAAGGAACAGGAGTTGACGTTATCGGGCTTGACTGGACAGTAGACATGGCTGACGGAAGGAAGAGATTAGGAACTGATATCAGTGTACAAGGAAATGTTGACCCTGCTTATCTGTTTTCTACTCTTCCTGCTCTATCTGAAGAAATTCAAAGGGTTGTGAGATGTGCAGGACCAAGAGGACACATTCTAAACCTCGGGCACGGCGTCCTTGTCGGTACGCCAGAAGAAGCAGTCGCACATTTCTTCGATGTTGCTAGAAGTTTGAACTTTGATACTTTGTCTCAAGATTTGGCAGCCCAAGAACCCAAATTGGTAGCATAG 1248 45.91 MSSFASPASVCTSLGWKSSSFLVHSGLKSSNSSIKLLVSRRRVSDKPISVTCSSSLSDPPLLVKAARGDPVSRPPAWMMRQAGRYMAVYRKLAEKYPSFRERSETTDLIVEISLQPWEAFHPDGVIIFSDILTPLPAFGVPFDIEDVRGPIIHSPIRSEEGLKALHPLDLEKLNFVGESLKLLRKEVEGSAAVLGFVGAPWTIATYIVEGGTTRTYTTIKRMCHTAPHVLKTLLSHLTQAISEYIVFQIEHGAHCIQIFDSWGGQLPPDMWESWSKPYIQKIVSTVRSKCPETPLVLYINGNGGLLERMKGTGVDVIGLDWTVDMADGRKRLGTDISVQGNVDPAYLFSTLPALSEEIQRVVRCAGPRGHILNLGHGVLVGTPEEAVAHFFDVARSLNFDTLSQDLAAQEPKLVA 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2275976 2279670 + CmoCh16G004760.1 Cmo16g00476 399511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00476 415 CDD URO-D 64 396 IPR006361 GO:0004853|GO:0006779
Cmo16g00476 415 Hamap Uroporphyrinogen decarboxylase [hemE]. 58 398 IPR006361 GO:0004853|GO:0006779
Cmo16g00476 415 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 1, CHLOROPLASTIC 25 410 - -
Cmo16g00476 415 SUPERFAMILY UROD/MetE-like 61 398 IPR038071 -
Cmo16g00476 415 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 75 84 IPR000257 GO:0004853|GO:0006779
Cmo16g00476 415 Pfam Uroporphyrinogen decarboxylase (URO-D) 61 396 IPR000257 GO:0004853|GO:0006779
Cmo16g00476 415 TIGRFAM hemE: uroporphyrinogen decarboxylase 62 395 IPR006361 GO:0004853|GO:0006779
Cmo16g00476 415 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 194 210 IPR000257 GO:0004853|GO:0006779
Cmo16g00476 415 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 25 410 - -
Cmo16g00476 415 Gene3D - 54 399 IPR038071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00476 K01599 hemE, UROD; uroporphyrinogen decarboxylase [EC:4.1.1.37] - csv:101212208 791.186
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo09g00814 Cmo16g00476 CCT
Cmo01g01303 Cmo16g00476 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01142 Cmo-Chr4:5828214 Cmo16g00476 Cmo-Chr16:2275976 2.39E-129 dispersed
Cmo16g00476 Cmo-Chr16:2275976 Cmo04g00112 Cmo-Chr4:586830 4.53E-141 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g112 . . . . Bpe09g00260 Bpe08g00979 . Bma13g00929 Cmo16g00476 . Cma01g01247 Cma09g00819 Car01g01069 Car09g00736 Sed04g2437 . Cpe02g00669 Bhi09g03509 Tan01g4322 Cmetu07g0523 . Hepe01g1439 Mch11g1011 . Cla11g01712 Cam11g1780 Cec11g1801 Cco11g1806 Clacu11g1939 Cmu11g1750 Cre11g2158 . . . . Lsi04g02014 Csa04g02287 Chy07g00024 Cme07g00538 Blo07g00966 Blo10g00733 . . . . Bma07g01138 . . Cmo01g01303 Cmo09g00814 . Cma16g00441 . . Cpe14g00371 . . . . . . . . . . . . . . . . Csa04g00805 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011363 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00476 Cmo_Chr16 FPKM 4.41049 5.02072 4.941177 6.776291 9.64349 10.841285 10.283097 7.652927 6.587137 6.840485