Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00478 ATGAGATCGACATTGTTGACGCCTCTTCTGATCTCTTTCTTTTTCTTGTTCTTTTCTTTCTCTCTTGCTCTCGTGCCTGCTAACGAGACCTTCAAGTTCGTCAATGAAGGCGACTTTGGTGAGTTCATCATCGAGTACGACGGCACCTACAGACCTCTCAGCATCTTCAGATTTCCATTTCAGTTAGCTTTCTACAACACGACGCCGAACGCTTACACTCTCGCTCTTCGAATTTCGATTCGTCGCTCCGAATCGATGATACGGTGGGTTTGGGAGGCCAATCGCGGCCGTCCGGTGCGCGAAAATGCTACATTCTCTCTCTCCGCCAACGGAAACCTAGTTCTCGCTGAAGCCGACGGCACTGTTGTATGGCAATCGAACACAGCCAACAAAGGCGTTGTTGGATTCGAATTGCTTCCGAGTGGCAACATGGTGTTGTTAGACTCCAATGGCAAATTCCTCTGGCAGAGCTTCGATTCGCCGACGGACACACTCCTAGTCGGCCAATCTCTCCGTCTCGGCGGGCCAATGAAGCTAGTAAGCCGCGCATCGGAGGTAATGAACGTCAATGGACCTTACAGCCTTGTAATGGAACGAAAAGCCCTATCTCTGTACTACAAAAGCCCTAACTCTCCAAAACCGATGCGGTACTACTCATCCACAGACATGCTCTCAGTCCGGAAAGGCGTTCTCGCAAATCTCACACTAATCGCCGACGTAGATCCAGATCAAGGATTCGCCACCGAATTAATACTGAACTCCGACACCGGCTCGCCTCAGAGCGGCGGTGCAGTTCTAACCCGGCCGAAGTACAACAGCACACTAACATTCCTCCGATTAGGAATCGACGGCAACCTCCGCCTGATCACATACAACGACAAAGTCGATTGGGGCCCGTCGGAGATTTCGTTCACACTCTTCGATAGGGATTCAACTCGGGAGAACGAATGCCAGTGGCCAGAGCGGTGCGGACAGTTCGGGTTGTGCGAGGACAACCAGTGCGTAGCCTGTCCAACAGAGAACGGACTGGCGGGATGGAGCAAGAGCTGCGCGCCGAAGAAGGTAAGTTCCTGCGATCCCAAAAGCTTCCATTACTATAAACTAGTCGGTGTGGATCATGTCTTGACAAAGTACAACAAAGGAGAAGGGCCAATGGGACAGAAGGAGTGTGAGAAGAAGTGCAATTTGGACTGCAAATGTTTGGGATACTTTTACCAAACCAAAGGGTCGCTTTGTTGGGTTGCAAATGAGCTGAAAACTTTGATAAAAGTGGCCAATTCCACTCATTTGGGCTTCATCAAAACGCCCAATAAGTAG 1317 50.34 MRSTLLTPLLISFFFLFFSFSLALVPANETFKFVNEGDFGEFIIEYDGTYRPLSIFRFPFQLAFYNTTPNAYTLALRISIRRSESMIRWVWEANRGRPVRENATFSLSANGNLVLAEADGTVVWQSNTANKGVVGFELLPSGNMVLLDSNGKFLWQSFDSPTDTLLVGQSLRLGGPMKLVSRASEVMNVNGPYSLVMERKALSLYYKSPNSPKPMRYYSSTDMLSVRKGVLANLTLIADVDPDQGFATELILNSDTGSPQSGGAVLTRPKYNSTLTFLRLGIDGNLRLITYNDKVDWGPSEISFTLFDRDSTRENECQWPERCGQFGLCEDNQCVACPTENGLAGWSKSCAPKKVSSCDPKSFHYYKLVGVDHVLTKYNKGEGPMGQKECEKKCNLDCKCLGYFYQTKGSLCWVANELKTLIKVANSTHLGFIKTPNK 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2288991 2290307 + CmoCh16G004780.1 Cmo16g00478 399513

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00478 438 CDD B_lectin 45 161 IPR001480 -
Cmo16g00478 438 PANTHER SECRETED GLYCOPROTEIN EP1, PUTATIVE-RELATED 13 438 - -
Cmo16g00478 438 ProSiteProfiles Bulb-type lectin domain profile. 41 159 IPR001480 -
Cmo16g00478 438 PIRSF SLG 1 438 IPR035446 -
Cmo16g00478 438 SMART blect_4 44 161 IPR001480 -
Cmo16g00478 438 CDD PAN_AP_plant 356 436 - -
Cmo16g00478 438 Gene3D - 40 160 IPR036426 -
Cmo16g00478 438 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 208 IPR036426 -
Cmo16g00478 438 PANTHER - 13 438 - -
Cmo16g00478 438 Pfam D-mannose binding lectin 90 173 IPR001480 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00478 - - - csv:101212696 707.983
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo09g00811 Cmo16g00478 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00811 Cmo-Chr9:4171305 Cmo16g00478 Cmo-Chr16:2288991 3.02E-131 dispersed
Cmo16g00478 Cmo-Chr16:2288991 Cmo06g00273 Cmo-Chr6:1379086 8.41E-33 dispersed
Cmo16g00478 Cmo-Chr16:2288991 Cmo16g00479 Cmo-Chr16:2292896 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g115 . . . Bda09g00539 . . . . Cmo16g00478 . . Cma09g00816 . Car09g00733 . Cpe06g00651 . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00788 . Bpe11g00449 . . . . . Cmo09g00811 . Cma16g00443 . . Cpe14g00373 . . . . . . . . . . . . . . . . Csa04g00802 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004202 2 4 3 2 3 1 0 1 1 2 1 1 1 1 2 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00478 Cmo_Chr16 FPKM 6.097353 6.257328 15.312346 17.314899 15.566213 17.737503 19.789965 0.813311 1.13394 0.86864