Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00479 ATGAGATCGCCATTGTTGACGCCTCTTCTGATCTCTTTCTTTTTCTTGTTCTTTTCTTTCTCTCTTGCTCTCGTGCCTGCTAACGAGACCTTCAAGTTCGTCAATGAAGGCGAGTTCGGTGATTTCGCCGTCGAGTACGGCGGCACCTACAGAGTTCTCAGCATCTTCAGATTTCCATTTCAGTTAGCTTTCTACAACACGACGCCGAACGCTTACACGCTTGCTCTTAGAATTTCGATTCGTCGCTCCGAATCGGCGATACGGTGGGTTTGGGAGGCCAATCGCGGCCGTCCGGTGCGCGAAAATGCTACATTCTCTCTCTCCGCCAACGGAAACCTAGTTCTCGCTGAAGCCGACGGCACTGTTGTATGGCAATCGAACACAGCCAACAAAGGCGTTGTTGGATTCGAATTGCTTCCGAGTGGCAACATGGTGTTGTTCGACTCCAATGGCAAATTCCTCTGGCAGAGCTTCGATTCGCCGACGGACACACTCCTAGTCGGCCAATCGCTCCGTCTCGGCGGGCCAATGAAGCTAGTAAGCCGCGCATCGGAGGAAATGAACGTCAATGGACCTTACAGCCTTGTAATGGAACGAAAAGTCCTATCTCTGTACTACAAAAGCCCTAACTCTCCGAAACCGATGCGGTACTACTCATCCACAGACATGCTCTCAGTCCGGAAAGGCGTTCTCGCAAATATCACACTAAACGCCGCCGTAGATCCAGATCAAGGATTCGCCACCGAATTAACACTGAACTACGACACCGGCTCGACTGAGAGCGGCGGTCCAATTCTAACCCGGCCGAAGTACAACAGCACACTAACATTCCTCCGATTAGGAATCGACGGCAACCTCCGCCTGATCACATACAACGACAAAGTCGATTGGGGCCCGTCGGAGATTTCGTTCACACTCTTCGATAGGGATTCAAGTTGGGAGAACGAATGCCAGTGGCCAGAGCGGTGCGGACAGTTCGGGTTGTGCGAGGACAACCAGTGCGTAGCCTGTCCAACAGAGAACGGACTGGCGGGATGGAGCAAGAGCTGCGCGCCGAAGAAGGTAAGTTCCTGCGATCCCAAAAGCTTCCATTACTATAAACTAGTCGGTGTGGATCATTTCTTGACAAAGTACAACAAAGGAGAAGGGCCAATGGGACAGAAGGAGTGTGAGAAGAAGTGCAATTTGGATTGCAAATGTTTGGGATATTTTTACCAAACCAAAGGGTCGCTTTGTTGGGTTGCAAATGAGCTGAAAACTTTGATAAAAGTGGCCAATTCCACTCATTTGGGCTTCATCAAAACACCCAATAAGTAG 1317 50.34 MRSPLLTPLLISFFFLFFSFSLALVPANETFKFVNEGEFGDFAVEYGGTYRVLSIFRFPFQLAFYNTTPNAYTLALRISIRRSESAIRWVWEANRGRPVRENATFSLSANGNLVLAEADGTVVWQSNTANKGVVGFELLPSGNMVLFDSNGKFLWQSFDSPTDTLLVGQSLRLGGPMKLVSRASEEMNVNGPYSLVMERKVLSLYYKSPNSPKPMRYYSSTDMLSVRKGVLANITLNAAVDPDQGFATELTLNYDTGSTESGGPILTRPKYNSTLTFLRLGIDGNLRLITYNDKVDWGPSEISFTLFDRDSSWENECQWPERCGQFGLCEDNQCVACPTENGLAGWSKSCAPKKVSSCDPKSFHYYKLVGVDHFLTKYNKGEGPMGQKECEKKCNLDCKCLGYFYQTKGSLCWVANELKTLIKVANSTHLGFIKTPNK 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2292896 2294212 + CmoCh16G004790.1 Cmo16g00479 399514

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00479 438 PIRSF SLG 1 438 IPR035446 -
Cmo16g00479 438 Gene3D - 59 159 IPR036426 -
Cmo16g00479 438 PANTHER SECRETED GLYCOPROTEIN EP1, PUTATIVE-RELATED 13 438 - -
Cmo16g00479 438 SMART blect_4 44 161 IPR001480 -
Cmo16g00479 438 CDD PAN_AP_plant 356 436 - -
Cmo16g00479 438 ProSiteProfiles Bulb-type lectin domain profile. 41 159 IPR001480 -
Cmo16g00479 438 CDD B_lectin 44 161 IPR001480 -
Cmo16g00479 438 PANTHER - 13 438 - -
Cmo16g00479 438 Pfam D-mannose binding lectin 90 173 IPR001480 -
Cmo16g00479 438 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 208 IPR036426 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00479 - - - csv:101212696 716.842
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00712 Cmo16g00479 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00479 Cmo-Chr16:2292896 Cmo06g00272 Cmo-Chr6:1374638 1.72E-33 dispersed
Cmo16g00478 Cmo-Chr16:2288991 Cmo16g00479 Cmo-Chr16:2292896 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g79 . . . . Bpe09g00267 . . Bma13g00924 Cmo16g00479 Cmo04g00712 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00726 Bda05g00812 . . Bpe03g00874 . . . . . Cma04g00664 Cma16g00445 . . Cpe14g00374 Cpe01g00599 . . . . . . . Cla07g00969 Cam07g1042 Cec07g1113 Cco07g1090 Clacu07g1014 Cmu07g1007 Cre07g1384 . . Chy07g00983 Cme07g01358
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004202 2 4 3 2 3 1 0 1 1 2 1 1 1 1 2 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00479 Cmo_Chr16 FPKM 24.272583 26.167309 56.254837 54.913883 27.040815 27.515379 25.712799 14.066334 12.919846 13.715253