Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00480 ATGGACTTGCCAATGAAGAGGCCTATTTCAGGTGATCGGAGAACCCATTACAGAATAGAAGCTAGAAATCTTTGTTACAAAATAAGTGAAAGTTTTGATGGGTTGAATTGGTTCTGTGGTGGAGGCAGCTCAAAGAGAGTTCCAAAGTTCATCTTAAAGAATGTGAACTGTGAGGCAAGAGCAGGGGAGATTACTGCCATTGCTGGTCCTAGTGGGGCTGGCAAAACAACATTGCTAGAGATTCTTGGAGGGAACATACCTTTAAGGAAGATTTCAGGTCAAGTGCTTGTTAATGATCAGCATATGATTGAGAAAACGTTTCCAAGAATCTCGGGATACGTCACGCAGGACGATGCGCTTTTCCCTTTCCTCACAGTTGAAGAAACACTCATGTATAGTGCTCTGTTGAGGCTTGGTGGTGGGAGAAAAGAGGCTGAATCTAGAGTGAGGAAGCTAATGAAGGACCTTGGGTTAGAACACGTAGCAGCGTCGAGAGTTGGAGATGGATCGAACCGAGGCATTTCAGGAGGTGAAATGCGTCGAGTTTCGATTGGAGTTGAATTGGTTCATGACCCAGCTGTGATTTTCATTGATGAACCTACTTCAGGGTTGGATTCTGTCTCGGCAGTTCATGTTATGTCAGTGCTTAGAAGAATGGTCATTAGCCAAGGTAAGACTGTTCTAATAACCATCCATCAACCCGGTTTTCGAATCATGGAACTCTTCGATCGTCTGATTCTTCTGTCGAGTGGAGTTGTGATGCATAATGGACCATTGGGTCATCTTGAGGAGAAGCTTAAGCTTGCTACTCATCAGATCCCTCACCATGTCAATGTTCTTGAATTCGCCATTGACGTGGTGGATAGCTTGGCTATGCATACTTCAGAAACTTTCAACAAACTCCATTACCAACAAAACAAGGTCGAGAATCAGACAATAAGAGCTCAACACATCGACACAAAGGACGAAGAATCCATTTCGTACCAGAATTCTCGATCTACGGAAGTCATAATACTAGGACAAAGATTTTTCAGAAACACATTTAGGACGAAACAACTCTTTGCTACAAGAGTCATTCAAGCCTTGGTGGCTGGATTAGTACTTGGGACCATATTCTTCAAGACCGGGAATAACAACGACAAAACTACGTTGCAAACCCGGCTCGGGTTCTTCGCCTTTAGTCTCACGTTCTTGCTGTCTTCAACGACGGAAGGCCTTCCAATCTTCTTGAGGGAGAGAATGATCCTAATGAGAGAGACATCAAGAGGTGCTTACAGAGTTTCTTCCTATGTTCTAGCAAACACATTCATATTTCTCCCATTCCTTCTGATGGTCTCTCTACTCTTCGCAGCCAGTGTTTACTGGTTGGTTGGTTTGAAAAACGACATTTTCGGGTTCTTTTACTTCTCTCTAATCGTTTGGATGGTCGTTCTAATGTCGAATTCTTTCGTAGCATGTTTCAGTGCTCTTGTCCCAAATTTCATTACAGGAAACTCAGTAATATCAGGGCTAATGGGGTGTTTCTTTCTGTTTTCTGGTTACTTCATATCAAAGAAGAACATCCCCAACTACTGGATTTTCATGCACTATTTGAGTCTTTTCAAGTACCCATTTGAGTGTTTCTTGATAAATGAATATGGAGGAGATCCAGGGAAGGGGAGATGCATAGAGTCCAAACAAGGAGTATGTACAACATATGGAGAAGTGTTCTTAAGACAACAAGATATAAAAGAGTCACACAAATGGAGCAATTTGGCAGTAATGTTGGGATTCATTGTTGGGTACAGGATCCTGTCTTTTGTGATCTTGTGGTACAGATGTAACAGAACCAGAAGCTAG 1839 42.47 MDLPMKRPISGDRRTHYRIEARNLCYKISESFDGLNWFCGGGSSKRVPKFILKNVNCEARAGEITAIAGPSGAGKTTLLEILGGNIPLRKISGQVLVNDQHMIEKTFPRISGYVTQDDALFPFLTVEETLMYSALLRLGGGRKEAESRVRKLMKDLGLEHVAASRVGDGSNRGISGGEMRRVSIGVELVHDPAVIFIDEPTSGLDSVSAVHVMSVLRRMVISQGKTVLITIHQPGFRIMELFDRLILLSSGVVMHNGPLGHLEEKLKLATHQIPHHVNVLEFAIDVVDSLAMHTSETFNKLHYQQNKVENQTIRAQHIDTKDEESISYQNSRSTEVIILGQRFFRNTFRTKQLFATRVIQALVAGLVLGTIFFKTGNNNDKTTLQTRLGFFAFSLTFLLSSTTEGLPIFLRERMILMRETSRGAYRVSSYVLANTFIFLPFLLMVSLLFAASVYWLVGLKNDIFGFFYFSLIVWMVVLMSNSFVACFSALVPNFITGNSVISGLMGCFFLFSGYFISKKNIPNYWIFMHYLSLFKYPFECFLINEYGGDPGKGRCIESKQGVCTTYGEVFLRQQDIKESHKWSNLAVMLGFIVGYRILSFVILWYRCNRTRS 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2298110 2299948 - CmoCh16G004800.1 Cmo16g00480 399515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00480 612 SMART AAA_5 61 252 IPR003593 -
Cmo16g00480 612 ProSitePatterns ABC transporters family signature. 174 188 IPR017871 GO:0005524
Cmo16g00480 612 Pfam ABC transporter 52 202 IPR003439 GO:0005524
Cmo16g00480 612 Pfam ABC-2 type transporter 335 546 IPR013525 GO:0016020|GO:0140359
Cmo16g00480 612 Gene3D - 13 285 IPR027417 -
Cmo16g00480 612 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 604 - -
Cmo16g00480 612 CDD ABCG_EPDR 31 257 - -
Cmo16g00480 612 Pfam ABC-2 type transporter 232 298 IPR043926 GO:0140359
Cmo16g00480 612 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 19 275 IPR003439 GO:0005524
Cmo16g00480 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 268 IPR027417 -
Cmo16g00480 612 PANTHER ABC TRANSPORTER G FAMILY MEMBER 10 1 604 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00480 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101213419 1093.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00434 Cmo-Chr15:1962099 Cmo16g00480 Cmo-Chr16:2298110 2.01E-129 dispersed
Cmo16g00480 Cmo-Chr16:2298110 Cmo20g00120 Cmo-Chr20:606672 3.63E-167 dispersed
Cmo18g01312 Cmo-Chr18:12528364 Cmo16g00480 Cmo-Chr16:2298110 1.81E-60 dispersed
Cmo20g01061 Cmo-Chr20:9802334 Cmo16g00480 Cmo-Chr16:2298110 0 transposed
Cmo16g00480 Cmo-Chr16:2298110 Cmo04g00647 Cmo-Chr4:3214782 6.21E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1021 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo16g00480 . . . . Cpe14g00374 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003301 1 2 1 0 2 2 1 2 2 1 2 2 2 1 1 1 2 4 2 2 1 2 2 2 1 1 2 2 2 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00480 Cmo_Chr16 FPKM 11.400656 10.513591 7.829209 6.840859 6.200572 5.812899 8.088396 8.034854 8.548443 7.677327