Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00482 ATGCCCCCACCCCTCCGACCACCATCAGCGCACCAAGGAAAGACTACGAAAATGGGGGCGGGGGATGAAATGGCAATGGTTCAGTTCGAATTACTTGAAATATCTGTCATTCAGTATACTCCCGCGATCGATATTTGGAGTGTCGGCTGCATATTTGCTGAGGTTTTGTTGGGGAAGCCACTGTTTCCGGGTAAAAGCGTTGCCCATCAATTGGACTTGATTACTGATCTTCTCGGGACTCCCTCATCGGAAACCATTGCAGGAGTTCGGAATGAAAAGGCTAGGAGATATCTGTCAGAAATGAGAAGGAAATCTGCAGTGCCATTTTTGCAAAGATTTCCGAATTTGGATCTGGCAGCCATTCGCTTACTGCAAAGGCTATTAGCATTTGATCCGAAGGATCGACCATCGGCCGTGGAGGCTCTTGCTGATCCTTACTTTAAGGGCCTAGCCAAAGTTGAAAGAGAGCCTTCTTGTCAGCCTATCTCGAGATCGGAATTTGAGTTCGAGAGACGAAAATTAACAAAAGATGATGTACGGGAATTGTTATACCGAGAAATATTAGAATATCATCCTCAAATTCGTGATGATTATTTGAATGGAACCGATACTACAAAGCTCCTCTATCCTAGCTTTACAGGTCATTTTAAAAGCCAATTCACCTACCACAAGGAGAACAACGGTAAAAGCGCACCTGTTTTGCCTCTAGAACGTAAACACTTCTCCCTCCCACGGTCCACCGTTTGCACAAATTTGGTTTCACCCGATCGTGAGCCCGTTCGACGAAATCCCAAAGCCTGTAATAATAGCGTGGGATTACCTGATAGAAGATTTGGGAATCCATCAAAGGCTCATCCTCCACCTAAAGTGCCTGGCGAGTTGTCGGGCCCGTCCTTCCATGTGAGAACAGAAACATAA 918 45.86 MPPPLRPPSAHQGKTTKMGAGDEMAMVQFELLEISVIQYTPAIDIWSVGCIFAEVLLGKPLFPGKSVAHQLDLITDLLGTPSSETIAGVRNEKARRYLSEMRRKSAVPFLQRFPNLDLAAIRLLQRLLAFDPKDRPSAVEALADPYFKGLAKVEREPSCQPISRSEFEFERRKLTKDDVRELLYREILEYHPQIRDDYLNGTDTTKLLYPSFTGHFKSQFTYHKENNGKSAPVLPLERKHFSLPRSTVCTNLVSPDREPVRRNPKACNNSVGLPDRRFGNPSKAHPPPKVPGELSGPSFHVRTET 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2306493 2308177 + CmoCh16G004820.1 Cmo16g00482 399517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00482 305 Gene3D Phosphorylase Kinase; domain 1 171 193 - -
Cmo16g00482 305 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 19 38 260 - -
Cmo16g00482 305 MobiDBLite consensus disorder prediction 254 305 - -
Cmo16g00482 305 Gene3D Transferase(Phosphotransferase) domain 1 31 170 - -
Cmo16g00482 305 ProSiteProfiles Protein kinase domain profile. 1 147 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00482 305 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 38 260 - -
Cmo16g00482 305 SUPERFAMILY Protein kinase-like (PK-like) 38 191 IPR011009 -
Cmo16g00482 305 Pfam Protein kinase domain 36 147 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00482 Cmo-Chr16:2306493 Cmo11g02038 Cmo-Chr11:13860920 1.59E-104 dispersed
Cmo16g00482 Cmo-Chr16:2306493 Cmo04g00702 Cmo-Chr4:3484679 6.66E-153 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74961 PF00069 Pkinase 1.10E-13 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00482 - K04371 csv:101213897 473.396