Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00489 ATGAGAAGCTCCACGTCCATGGCGGCTGCTTCTTCTTCTTCCTCTGCAGCATTCTTCTCTGGGATTCCATTGATAGACCTCTCTGCACCAGATGCTAAACAACTCATTGTCAAAGCTTGTGAAGAACTCGGATTCTTTAAGGTTGTCAACCATGGTGTCCCCATGGAATTCATCTCCTCTCTTGAATCAGAATCCACCAAATTCTTCTCCCTTCCCCTCTCTGAAAAACAGAGAGCTGGCCCTCCTTCCCCTTTTGGCTATGGAAACAAACAAATTGGCCGCAATGGCGATGTCGGTTGGGTTGAATATCTCCTCTTGAACACTCATCTCGAATCCAACTCCGATGGGTTCCTCTCCATTTTTGGCCAAGACCCACAAAAACTCCGCTCTGCTGTGAACGATTACATCTTGGCTGTGAGGAACATGGCGGGTGAAATCCTCGAGCTAATGGCGGAAGGGTTGATGATTCAACAAAGAAACGTGTTCAGTAAGCTCGTGATGGATGAACAGAGCGACTCTGTTTTCAGAGTGAACCATTATCCGCCATGTCCAGACCTTCAAGCTTTAAAAGGAACAAACATGATTGGATTTGGAGAACACACAGACCCTCAAATCATTTCAGTTTTGAGATCAAACAACACTTCTGGATTTCAAATCTCTCTCGCAGATGGGAATTGGATATCTGTTCCTCCCGATCACAGCTCCTTCTTCATCAATGTTGGCGACTCTTTACAGGTGATGACTAATGGAAGATTCAAAAGTGTGAAGCATAGAGTTTTGACAAACAGCTCGAAGTCAAGGGTTTCAATGATCTACTTCGGTGGGCCACCGTTGAGTGAAAAGATAGCTCCTTTAGCTTCCCTTATGCAAGGAGAAGAAAGAAGTTTGTACAAAGAGTTTACATGGTTTGAGTACAAAAGATCAGCTTACAACTCCAGGTTGGCTGACAACAGGCTTGTGCCCTTTGAAAGAATTGCAGCCTCATAA 987 44.78 MRSSTSMAAASSSSSAAFFSGIPLIDLSAPDAKQLIVKACEELGFFKVVNHGVPMEFISSLESESTKFFSLPLSEKQRAGPPSPFGYGNKQIGRNGDVGWVEYLLLNTHLESNSDGFLSIFGQDPQKLRSAVNDYILAVRNMAGEILELMAEGLMIQQRNVFSKLVMDEQSDSVFRVNHYPPCPDLQALKGTNMIGFGEHTDPQIISVLRSNNTSGFQISLADGNWISVPPDHSSFFINVGDSLQVMTNGRFKSVKHRVLTNSSKSRVSMIYFGGPPLSEKIAPLASLMQGEERSLYKEFTWFEYKRSAYNSRLADNRLVPFERIAAS 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2353890 2355617 + CmoCh16G004890.1 Cmo16g00489 399524

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00489 328 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 11 324 - -
Cmo16g00489 328 PRINTS Isopenicillin N synthase signature 36 53 - -
Cmo16g00489 328 PRINTS Isopenicillin N synthase signature 200 221 - -
Cmo16g00489 328 PRINTS Isopenicillin N synthase signature 236 262 - -
Cmo16g00489 328 Pfam 2OG-Fe(II) oxygenase superfamily 172 274 IPR044861 -
Cmo16g00489 328 SUPERFAMILY Clavaminate synthase-like 19 316 - -
Cmo16g00489 328 Gene3D - 2 316 IPR027443 -
Cmo16g00489 328 Pfam non-haem dioxygenase in morphine synthesis N-terminal 22 113 IPR026992 -
Cmo16g00489 328 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 170 276 IPR005123 -
Cmo16g00489 328 PANTHER GIBBERELLIN 2-OXIDASE 11 324 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00489 K04125 GA2ox; gibberellin 2beta-dioxygenase [EC:1.14.11.13] - csv:101215820 582.793
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01392 Cmo-Chr3:10170265 Cmo16g00489 Cmo-Chr16:2353890 2.19E-139 dispersed
Cmo07g00106 Cmo-Chr7:610842 Cmo16g00489 Cmo-Chr16:2353890 5.92E-137 dispersed
Cmo08g00478 Cmo-Chr8:2956802 Cmo16g00489 Cmo-Chr16:2353890 4.88E-100 dispersed
Cmo13g00566 Cmo-Chr13:6437135 Cmo16g00489 Cmo-Chr16:2353890 1.06E-151 dispersed
Cmo14g00968 Cmo-Chr14:5170160 Cmo16g00489 Cmo-Chr16:2353890 9.52E-93 dispersed
Cmo16g00489 Cmo-Chr16:2353890 Cmo18g00448 Cmo-Chr18:2974900 3.20E-154 dispersed
Cmo16g00489 Cmo-Chr16:2353890 Cmo04g00699 Cmo-Chr4:3463934 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g898 . . . . . . . . Cmo16g00489 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00453 . Car16g00411 Cpe14g00383 . . . . . . . . Cla07g00995 Cam07g1070 Cec07g1142 Cco07g1120 Clacu07g1044 Cmu07g1035 Cre07g1411 . . Chy07g01013 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004421 1 1 2 3 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00489 Cmo_Chr16 FPKM 4.364124 2.804085 4.423999 0.0 4.363534 3.340916 3.013308 4.895072 4.781603 5.174238