Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00493 ATGGCCGCGGTTGCTGAGAATTCCGGTGAGGCAGCGGCTGCCAAGAATTTTGATCCGCAGATGAAACCCAAATCACAATTTGATGCTAATAACCTCGCTGAAATGTTCAGTAATTTGAACCCTTTGGCTAAGGAGTTTTTCCCTTCCTCTTACTCTCATCATGATCGCCAAGATTTTCAATTCTATTATCAAAACAATACTCGATCGTCGGCCAAAGCCTTTCACGTCGCCGATCAACTGTTGGACGGTGATATCAATCGCAGGAGACGAAGCGACTTTAATAACCAGGGGAGAAGAAGAATGAATAACAATAGATCTGTCAGAGCTCAGCAAGAGGAAAGTATAAGGAGGACTGTCTATGTATCTGATATCGATAAGGATGTCTCTGAAGAGGAGCTCGCCAAGGTATTCAGGGAGTTTTGTGGTTATGTTAATGATTGCCGAATATGTGGCGATCCCCATTCAGTTCTTCGTTTTGCTTTTGTGGAGTTTGCTAATGAGCATAGTGCTAGAACAGCCATAGGCCTTAGCGGGACGGTGGTCGGGTCTTATCCAGTTAAGGTATTGCCTTCAAAGACTGCCATTCTTCCTGTGAATCCTACCTTTCTCCCTAAGTCAAACGACGAATGGGATATGTGTACAAGAACTATCTACTGCACAAATATTGATAAGAAGGTATCTCAGGCTGAAGTTAAGAGTTTCTTTGAAACATCTTGTGGTGAGGTAACTCGCTTGAGGTTGTTGGGGGATCAGCTGCATTCGACCCGTATAGCGTTTGTCGAGTTTGCTATGGCAGAGACGGCTCTTCAAGCACTGAATTGCAGTGGCATGATCTTGGGATCTCAGCCAATCAGGTCTGGTGAAGCTCTCACTGTTCTAAATATATTGGTTCATACCTTTTTTCACTTACATTGTTTCATGAAAATTTGTAGGGTAAGTCCTTCTAAGACACCGGTTCGGCCACGGGTTACTCGCCCGGGAAGCATGAAGCCATCTTGA 999 44.44 MAAVAENSGEAAAAKNFDPQMKPKSQFDANNLAEMFSNLNPLAKEFFPSSYSHHDRQDFQFYYQNNTRSSAKAFHVADQLLDGDINRRRRSDFNNQGRRRMNNNRSVRAQQEESIRRTVYVSDIDKDVSEEELAKVFREFCGYVNDCRICGDPHSVLRFAFVEFANEHSARTAIGLSGTVVGSYPVKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQAEVKSFFETSCGEVTRLRLLGDQLHSTRIAFVEFAMAETALQALNCSGMILGSQPIRSGEALTVLNILVHTFFHLHCFMKICRVSPSKTPVRPRVTRPGSMKPS 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2372003 2375411 - CmoCh16G004930.1 Cmo16g00493 399528

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00493 332 MobiDBLite consensus disorder prediction 1 24 - -
Cmo16g00493 332 Gene3D - 211 286 IPR012677 -
Cmo16g00493 332 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 186 IPR000504 GO:0003723
Cmo16g00493 332 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 285 IPR000504 GO:0003723
Cmo16g00493 332 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 193 IPR000504 GO:0003723
Cmo16g00493 332 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 290 - -
Cmo16g00493 332 SUPERFAMILY RNA-binding domain, RBD 101 194 IPR035979 GO:0003676
Cmo16g00493 332 Gene3D - 63 194 IPR012677 -
Cmo16g00493 332 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 292 IPR000504 GO:0003723
Cmo16g00493 332 SMART rrm1_1 118 189 IPR000504 GO:0003723
Cmo16g00493 332 SMART rrm1_1 216 287 IPR000504 GO:0003723
Cmo16g00493 332 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 1 290 - -
Cmo16g00493 332 SUPERFAMILY RNA-binding domain, RBD 205 285 IPR035979 GO:0003676
Cmo16g00493 332 Pfam Ataxin-2 C-terminal region 35 50 IPR009818 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00493 - - - csv:101215100 543.502
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00693 Cmo16g00493 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00026 Cmo-Chr16:129037 Cmo16g00493 Cmo-Chr16:2372003 4.23E-103 dispersed
Cmo16g00493 Cmo-Chr16:2372003 Cmo18g01373 Cmo-Chr18:12834456 2.41E-102 dispersed
Cmo16g00493 Cmo-Chr16:2372003 Cmo04g00693 Cmo-Chr4:3444717 3.33E-178 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g910 . . . . . . . Bma13g00905 Cmo16g00493 Cmo04g00693 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g00770 Blo07g00996 . Bda05g00815 Bda12g00790 . . . . . . . Cma04g00645 Cma16g00458 Car04g00600 Car16g00416 Cpe14g00386 Cpe01g00582 . . . . . . . Cla07g01001 Cam07g1077 Cec07g1149 Cco07g1127 Clacu07g1051 Cmu07g1042 Cre07g1417 . . Chy07g01020 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004204 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00493 Cmo_Chr16 FPKM 18.996496 20.360584 16.913666 16.515741 26.759663 26.807617 26.990669 14.740333 14.965466 14.969781