Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00499 ATGGCGGACGAAGTGAAACTGCTGGATTTCTGGCCGAGCATGTTTGGGATACGAGTTAGAATAGCCCTGGCCGAGAAGGGCGTAGCGTATGAATACATGGAACAAGATCTCAGGAACAAGAGCCCTTTGCTGTTGCAGATGAACCCAGTTCACAAAAAGATCCCTGTTCTTGTCCATAATGGAAGACCCATTTGTGAATCTTCCATTATCGTTCAGTACATCGATGAAGTTTGGAAGGACAAAGCGCCTCTCCTGCCGTCTGATCCTTATCACAGGGCTCAGGCCAGATTCTGGGTGGATTTCATCGACAAGAAGGAGCTGATTGGAGTTCTGAAGCAGCTGGAAGAGGTTCTAGGGGAGAAGGGTTTCTTCGGAGGGGAGCGTTTGGGGTTTGTAGACATTGCTTTGATTGGATTCCACAGTTGGTTTTATAGCTATGAGGCGTTTGGTAAGTTGAGCATAGAGGCTGAGTGTCCCAAGATAATGGGTTGGGCGAAGAGATGCTTGGAGAAGGAGAGTGTTTCCAAGTCCTTGCCTGACTCCAAGAAGGTCTATGACTTTGCGTATCTGGAGGTCATTCCGGATGGAGCTGTTCTGTTTTCAAATGCTGTTTCTTTTGTTAAACTTACGGGGATTCATTAA 642 47.04 MADEVKLLDFWPSMFGIRVRIALAEKGVAYEYMEQDLRNKSPLLLQMNPVHKKIPVLVHNGRPICESSIIVQYIDEVWKDKAPLLPSDPYHRAQARFWVDFIDKKELIGVLKQLEEVLGEKGFFGGERLGFVDIALIGFHSWFYSYEAFGKLSIEAECPKIMGWAKRCLEKESVSKSLPDSKKVYDFAYLEVIPDGAVLFSNAVSFVKLTGIH 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2411394 2414595 + CmoCh16G004990.1 Cmo16g00499 399534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00499 213 SFLD Glutathione Transferase (cytosolic) 2 105 IPR040079 -
Cmo16g00499 213 SFLD Main.3: Omega- and Tau-like 2 105 IPR045073 -
Cmo16g00499 213 PANTHER S-TRANSFERASE TAU 22, PUTATIVE-RELATED 104 189 - -
Cmo16g00499 213 PANTHER S-TRANSFERASE TAU 22, PUTATIVE-RELATED 4 105 - -
Cmo16g00499 213 Pfam Glutathione S-transferase, C-terminal domain 105 171 IPR004046 -
Cmo16g00499 213 SUPERFAMILY Thioredoxin-like 5 104 IPR036249 -
Cmo16g00499 213 CDD GST_N_Tau 5 78 - -
Cmo16g00499 213 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 104 189 IPR045073 -
Cmo16g00499 213 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 105 IPR045073 -
Cmo16g00499 213 Gene3D - 86 105 - -
Cmo16g00499 213 CDD GST_C_Tau 89 188 IPR045074 GO:0004364|GO:0006749
Cmo16g00499 213 Gene3D Glutaredoxin 1 85 - -
Cmo16g00499 213 Gene3D - 106 192 - -
Cmo16g00499 213 Pfam Glutathione S-transferase, N-terminal domain 5 76 IPR004045 -
Cmo16g00499 213 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 63 187 IPR010987 -
Cmo16g00499 213 SUPERFAMILY GST C-terminal domain-like 76 189 IPR036282 -
Cmo16g00499 213 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00687 Cmo-Chr4:3407212 Cmo16g00499 Cmo-Chr16:2411394 4.81E-71 dispersed
Cmo04g00688 Cmo-Chr4:3408834 Cmo16g00499 Cmo-Chr16:2411394 1.32E-92 dispersed
Cmo16g00499 Cmo-Chr16:2411394 Cmo03g00394 Cmo-Chr3:4801084 2.01E-47 dispersed
Cmo16g00499 Cmo-Chr16:2411394 Cmo16g00501 Cmo-Chr16:2417740 2.32E-53 proximal
Cmo16g00499 Cmo-Chr16:2411394 Cmo16g00500 Cmo-Chr16:2417204 1.31E-59 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00499 K00799 - csv:101218562 317.775