Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00500 ATGGCGGATGAAGTGAAACTGTTGGATTTCTGGCCGAGCATGTTCGGGATACGAGTTAGAATAGCCCTGGCCGAGAAGGGCATAGCGTATGAATACATGGAACAAGATCTGAGGAACAAGAGCCCTTTGCTGTTGCAGATGAACCCAATTCACAAGAAGATCCCTGTTCTTGTCCATAATGGAACACCCATTTGTGAATCTTCCATTATCCTTCAGTACATCGATGAAGTTTGGAAGGACAAAGCTCCTCTCCTCCCGTCTGATCCTTTATCACAGGGCTCAGGCCAGATTCTGGGTGGATTTCATCGACAAAAAGGTAACTTTATTCGACATTTCGAATTCTATTGA 348 44.83 MADEVKLLDFWPSMFGIRVRIALAEKGIAYEYMEQDLRNKSPLLLQMNPIHKKIPVLVHNGTPICESSIILQYIDEVWKDKAPLLPSDPLSQGSGQILGGFHRQKGNFIRHFEFY 115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2417204 2417551 + CmoCh16G005000.1 Cmo16g00500 399535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00500 115 SFLD Main (cytGST) 5 95 - -
Cmo16g00500 115 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 4 97 - -
Cmo16g00500 115 SFLD Glutathione Transferase (cytosolic) 5 95 IPR040079 -
Cmo16g00500 115 Pfam Glutathione S-transferase, N-terminal domain 5 76 IPR004045 -
Cmo16g00500 115 CDD GST_N_Tau 5 78 - -
Cmo16g00500 115 SUPERFAMILY Thioredoxin-like 4 80 IPR036249 -
Cmo16g00500 115 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Cmo16g00500 115 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 97 IPR045073 -
Cmo16g00500 115 Gene3D Glutaredoxin 1 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00500 Cmo-Chr16:2417204 Cmo06g01285 Cmo-Chr6:9685452 1.13E-35 dispersed
Cmo16g00499 Cmo-Chr16:2411394 Cmo16g00500 Cmo-Chr16:2417204 1.31E-59 tandem
Cmo16g00500 Cmo-Chr16:2417204 Cmo04g00688 Cmo-Chr4:3408834 1.63E-41 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00500 K00799 - pvy:116115024 172.555