Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00501 ATGAAGGAGCTGATTGGAGTTCTGAAGCAGCTGGAAGAGGTTCTAGGGGAGAAGGGTTTCTTCGGAGGGGAGCGTTTGGGGTTTGTAGACATTGCTTTGATTGGATTCTACAGTTGGTTTTATAGCTATGAGGCGTTTGGTAAGTTGAGCATAGAGGCCGAGTGTCCCAAGATAATGGGTTGGGCGAAGAGATGCTTGGAGAAGGAGAGTGTTTCCAAGTCCTTGCCTGACTCCAAGAAGGTCTATGACTGCGCGGTTCAAATGAAGAAAGCACATGGCCTTGAATGA 288 47.92 MKELIGVLKQLEEVLGEKGFFGGERLGFVDIALIGFYSWFYSYEAFGKLSIEAECPKIMGWAKRCLEKESVSKSLPDSKKVYDCAVQMKKAHGLE 95
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2417740 2418027 + CmoCh16G005010.1 Cmo16g00501 399536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00501 95 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 1 92 IPR010987 -
Cmo16g00501 95 SUPERFAMILY GST C-terminal domain-like 1 90 IPR036282 -
Cmo16g00501 95 PANTHER GLUTATHIONE S-TRANSFERASE PARC-RELATED 2 89 - -
Cmo16g00501 95 CDD GST_C_Tau 1 83 IPR045074 GO:0004364|GO:0006749
Cmo16g00501 95 Gene3D - 1 95 - -
Cmo16g00501 95 Pfam Glutathione S-transferase, C-terminal domain 4 64 - -
Cmo16g00501 95 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 2 89 IPR045073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00501 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101218562 149.058
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00501 Cmo-Chr16:2417740 Cmo04g00688 Cmo-Chr4:3408834 9.45E-36 dispersed
Cmo16g00499 Cmo-Chr16:2411394 Cmo16g00501 Cmo-Chr16:2417740 2.32E-53 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g926 . . . . . . . . Cmo16g00501 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00706 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy07g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000291 5 5 16 3 3 4 0 3 4 5 2 4 5 4 5 5 4 4 3 4 3 8 4 5 5 8 2 4 1 17 145
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00501 Cmo_Chr16 FPKM 0.764146 0.572874 4.592746 5.643819 13.265389 12.488832 9.432892 1.050353 0.788831 1.256406