Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00505 ATGCAAGATCAAGATTGTTGTTCTAGCCCCGGTGAAGCGCAATTCATTCCGGAATTTACCTTGATTTCTCCTGATATTGCAATGGATAACTACTGTGATTCACCAGAACTCTTCGATATCAAGTGTTCTAAGTCTATGGAGCTTTCCTTTGAAAGTAGCTTTTCTGGAATTGAGGTTAATTACAAACAGAGGACTCCATCTGTTAGATTTTCCCAGTTGTGTGAAATCTATGATCCAGAACTGTCTCCAGAATCTTCCTTTGAGTTGGCTACTCCTCCAGCTACCAGTTCCACTCAATCTGAAGAACTCCTTCAAGCTGTAAGTGTCAATGCAGGTTCCTCTAATGATGCTGTGAGTTTGGATGGGATAAACTATGTGGAAGACAATTGGTTCAAGGGTGGTGATACCATTAGATCTGATGAAATTGAACATCCTTTATATCAAACAGCTCGTTTTGGGAACTTTTTTTACAGCTTCTCGTTATTGGAACCTGGGGATTATGTTGTTGATCTTCATTTTGCTGAAATTGTGTTTACCAATGGCCCTCCTGGTATGAGGATGTTTGATGTTTATTTGCAAGATCAGAAGGTCGTTTCTGGCTTGGACATATACGCTCGTGTTGGTGGGAATAAGCCTCTCGTTATATCTGACCTCAAAACTTCTGTAGATGTAAAAGATTTGACCATTAGATTTGAAGGACTGATGGGCAGGCCAATTGTTTGTGGTATCTGTGTGAGGAAAGATCTTCCTTCCATTCTTAAAGAAGTTGAACTGGTTGAAGATGTGGGATCCTCTCGGCTAGAACACTCAGAGATTTCCGAAGATGGTAGTGAGTTGATAGTAAAAGAGAATGAGCTGATGAAGAATGAGCTAGCAGCAGCAAGGAAACAAATGGAGGAACTTAGAAAGGAAAACAATCAGAAGAGTAAGGAATGTCAAGAAGCTTGGAAGTCTCTAAATGAGCTACAAAATGAGCTCATGCGCAAGTCAATGCATGTTGGATCTCTTGCCTTTGCCGTTGAGGGACAGGTGAAAGAAAAGAGCAGATGGTTTTCCTCATTGAGGGATCTTACTAGAAAAGTAAAGATTATGAAAATGGAAAACATCAAATTGTCGGAGGAGGCACTTGCATTCAAGAGCTGCTTTGTGGATATGAACGAAATGATGACATCCCAAATTCAGAGAGCATTGAAACAGCAATTAGATTTTCAAGAAAATCTGAAGACCAAATTTGTTGAAGGAGCTAAGGAACGTAAAGAACTCTACAATAAGATGTTGGAGTTGAAAGGAAACATTAGGGTCTTTTGTCGGTGTAGGCCCTTAAATACAGAAGAGATTGCCTCTGGAGCTCCTATGGTTGTTGATTTTGAGTCAGCTAAAGATGGTGAGCTGACTGTTAAGTCAAATGGAGCTCCCAAAAGGGTCTTCAAATTTGATGCTGTATTTGGTCCTCAAGCAAATCAAGGTGATGTCTTTGAAGACACTGCCCCATTTGCTGCTTCAGTTCTAGATGGCTACAACGTTTGCATATTTGCATATGGCCAAACGGGGACTGGAAAAACCTTTACAATGGAGGGTACTGAAGGAGCTCGTGGAGTCAATTATAGGATTCTTGAGGAGTTGTTTCGTTTAACGAAGGAGCGGCAGAAGCTCAATCGATATAAAGTATCTGTTAGTGTCTTGGAAGTGTATAATGAGCAAATAAGGGACTTGTTAGTGTCAGGATCTCAGTCAGGGAACGGTGTAAAACGGCTTGAAGTAAGGCAAATCAGTGAAGGGATACATCATGTTCCTGGCATGGTGGAGGCCCCTGTTGACAACATGAGTGAAGTTTGGGAAGTTCTACAAACTGGCAGTAATGCAAGAGCTGTTGGTTCAACCAATTGTAATGAGCACAGCAGCCGATCTCACTGCATACATTGTGTAATGGTGAAAGGGGAGAATTTGCTGAGTGGGGAGTGCACCAGCAGCAAACTCTGGCTGGTGGATTTGGCAGGGAGCGAGCGGATAGCTAAAGTAGAAGTACAGGGAGAACGTCTCAAGGAAACACAAAACATTAACAGATCACTTTCTGCACTTGGGGATGTCATAGCTGCTCTTGGGACAAAAAGTCCACACGTTCCTTTCAGGAACTCTAAGCTCACTCACTTGCTTCAAGACTCACTAGGGGGAGATTCAAAGACACTAATGTTCGTACAGATCAGTCCAAACGAAAATGACTTGAATGAAACTCTTTGTTCTTTGAACTTCGCAAGCAGAGTTAAGGGAATTGAGCTGGGTCCTGCAAAGAGACAGCTTGATATGTCTGAATTCCTTAAATGCAAACAAATGGCGCAAGCTTCAAAGCAGGATATGAAGAGTAAAGAACTACAAATGAGGAAAATGGAAGAAACAATTCATGGGTTTGACTTGAAAATGAAGGAAAAAGAGCAGAAAAACAAGAATCTACAAGACAAGGTGAAAGAACTTGAAGCCCAGCTTCTTGTTGAAAGGAAGCTACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATATAAAGGTTACTCGCCCACTGACTGAGAACAATGGCTTCAAACCATCATTCTACCCTTTTCCTGGTGGCATGAGTGATGGAACAGAGAAGGAGAACAATCCAGAGATGGCTGAGCTATCTTTTGTGCCAATGAAGAGGACAGGAAGAGCCTCGATTTGCACGATGGGTCGACGTGTACCGATGGCGCTCGAACCGAGGAGAAACTCCCTAATGCCTCTACCAAGCATGCCAAGCTCAGCTCATCTGCCATCAGCAATGTTGATAGAGGAAGATGAGAGCAACTGCGAGAGTCCTAAAGAGATAAAGTGTGTGAGAGGAGGAAGCGTTCAGAAGAAGAAGATGCAAATGAAACGAGGGGGTATCAATGTGGGGATGGAGAAGGTCAGGGTATCCATTGGAAGCCGAGGAAGGATGGCGGCAGCACACGCACACAGGGTGCTGCTAGGCAATGGTAGGAGAGCAGCTAATGACACTCAAAGTAAGAGGGAAAAGGAGAGGGGTTGGAACATGGGAACAATAGTAGGGAGAAACTCAAAGTAA 3072 43.13 MQDQDCCSSPGEAQFIPEFTLISPDIAMDNYCDSPELFDIKCSKSMELSFESSFSGIEVNYKQRTPSVRFSQLCEIYDPELSPESSFELATPPATSSTQSEELLQAVSVNAGSSNDAVSLDGINYVEDNWFKGGDTIRSDEIEHPLYQTARFGNFFYSFSLLEPGDYVVDLHFAEIVFTNGPPGMRMFDVYLQDQKVVSGLDIYARVGGNKPLVISDLKTSVDVKDLTIRFEGLMGRPIVCGICVRKDLPSILKEVELVEDVGSSRLEHSEISEDGSELIVKENELMKNELAAARKQMEELRKENNQKSKECQEAWKSLNELQNELMRKSMHVGSLAFAVEGQVKEKSRWFSSLRDLTRKVKIMKMENIKLSEEALAFKSCFVDMNEMMTSQIQRALKQQLDFQENLKTKFVEGAKERKELYNKMLELKGNIRVFCRCRPLNTEEIASGAPMVVDFESAKDGELTVKSNGAPKRVFKFDAVFGPQANQGDVFEDTAPFAASVLDGYNVCIFAYGQTGTGKTFTMEGTEGARGVNYRILEELFRLTKERQKLNRYKVSVSVLEVYNEQIRDLLVSGSQSGNGVKRLEVRQISEGIHHVPGMVEAPVDNMSEVWEVLQTGSNARAVGSTNCNEHSSRSHCIHCVMVKGENLLSGECTSSKLWLVDLAGSERIAKVEVQGERLKETQNINRSLSALGDVIAALGTKSPHVPFRNSKLTHLLQDSLGGDSKTLMFVQISPNENDLNETLCSLNFASRVKGIELGPAKRQLDMSEFLKCKQMAQASKQDMKSKELQMRKMEETIHGFDLKMKEKEQKNKNLQDKVKELEAQLLVERKLQQQQQQQQQQHIKVTRPLTENNGFKPSFYPFPGGMSDGTEKENNPEMAELSFVPMKRTGRASICTMGRRVPMALEPRRNSLMPLPSMPSSAHLPSAMLIEEDESNCESPKEIKCVRGGSVQKKKMQMKRGGINVGMEKVRVSIGSRGRMAAAHAHRVLLGNGRRAANDTQSKREKERGWNMGTIVGRNSK 1023
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2428290 2433240 - CmoCh16G005050.1 Cmo16g00505 399540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00505 1023 MobiDBLite consensus disorder prediction 994 1023 - -
Cmo16g00505 1023 ProSitePatterns Kinesin motor domain signature. 657 668 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cmo16g00505 1023 ProSiteProfiles Kinesin motor domain profile. 431 757 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo16g00505 1023 Pfam Malectin domain 107 243 IPR021720 -
Cmo16g00505 1023 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 431 764 IPR027417 -
Cmo16g00505 1023 Coils Coil 354 374 - -
Cmo16g00505 1023 Coils Coil 284 315 - -
Cmo16g00505 1023 CDD KISc_C_terminal 429 759 - -
Cmo16g00505 1023 PANTHER KINESIN-LIKE PROTEIN KLP-3 861 1004 - -
Cmo16g00505 1023 PANTHER KINESIN-LIKE PROTEIN KLP-3 17 844 - -
Cmo16g00505 1023 PRINTS Kinesin heavy chain signature 505 526 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo16g00505 1023 PRINTS Kinesin heavy chain signature 627 644 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo16g00505 1023 PRINTS Kinesin heavy chain signature 658 676 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo16g00505 1023 PRINTS Kinesin heavy chain signature 707 728 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo16g00505 1023 SMART kinesin_4 429 765 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo16g00505 1023 Coils Coil 778 840 - -
Cmo16g00505 1023 Gene3D - 105 249 - -
Cmo16g00505 1023 PANTHER KINESIN-LIKE PROTEIN KIN-14Q 861 1004 - -
Cmo16g00505 1023 PANTHER KINESIN-LIKE PROTEIN KIN-14Q 17 844 - -
Cmo16g00505 1023 Gene3D Kinesin motor domain 375 759 IPR036961 -
Cmo16g00505 1023 Pfam Kinesin motor domain 437 757 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00505 K10406 KIFC2_3; kinesin family member C2/C3 - csv:101222343 1625.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01148 Cmo-Chr5:9108426 Cmo16g00505 Cmo-Chr16:2428290 5.15E-172 dispersed
Cmo07g00575 Cmo-Chr7:2591208 Cmo16g00505 Cmo-Chr16:2428290 7.30E-71 dispersed
Cmo10g01101 Cmo-Chr10:6248032 Cmo16g00505 Cmo-Chr16:2428290 1.32E-75 dispersed
Cmo12g01086 Cmo-Chr12:9968666 Cmo16g00505 Cmo-Chr16:2428290 7.74E-152 dispersed
Cmo16g00505 Cmo-Chr16:2428290 Cmo01g00311 Cmo-Chr1:1484941 5.44E-106 dispersed
Cmo18g00309 Cmo-Chr18:1979031 Cmo16g00505 Cmo-Chr16:2428290 1.03E-94 dispersed
Cmo16g00505 Cmo-Chr16:2428290 Cmo04g00685 Cmo-Chr4:3397380 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g956 . . . . Bpe09g00290 . . Bma13g00898 Cmo16g00505 . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0984 . . . . . Blo10g00686 . . . . . . . . . Cma04g00636 Cma16g00466 Car04g00595 Car16g00421 . Cpe01g00574 . . . . . . . Cla07g01010 Cam07g1087 Cec07g1159 Cco07g1137 Clacu07g1061 Cmu07g1052 Cre07g1428 . . Chy07g01045 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003005 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00505 Cmo_Chr16 FPKM 44.092915 51.012505 51.10577 50.342621 4.614053 4.795049 5.140739 23.086708 22.662388 24.280561