Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00514 ATGTCGCTTCTCTGCAGTCTAACGTCCAATGATAGTCGAAACTTTGACGCTCGGTTATTACTCGAGATGTCTAGACACGGTTCAGAGAATGGAACTCAGCTGCTTCTGGAGATGAAACAAGCATCTTCCAAATCCATCCATTATAGTTTGCTTTCAGCTACAGATAGCCATGGAGGTAGCGATGACGAAGATGATGAAGACGACAACGAAGAAGACGAAGTTGTTCCAGTCATGGCGGTCGTGATATTGCAGCAATTTTGGTTGCCATCTTTGAACTTCAATCGGCTCTGGAGAACTGTTTCTCAACATGTAGGCTCCACAAATGATTCACACAGAAACGACGATGAATTCATCAATGGCCTTCTTCCTCCAGGCTTCGACCAAAAATCCTGTTTAAGCCGATACCAACTGAATCTCTACAGAAAACCTTCTCCCTACATACCCTCTTCTCCTCTCCTCTCTAAGCTCCGCCGCTATGAATCCCTCCACCGCCGCTGCGGCCCCAATTCGCCATCCTTCCGCCGAGCTCTTGTCGGTCTAACTTCACCCACAAACTCCACATCCCTGCCGGAAGACTGCAAATACGCTGTGGTTTTAACCCGCGATGGCCTAGGCAACCGTATCCTCGCTATTATCTCCGCCTTCTTCTACGCTCTAATGTCCGATCGCGTCTTTCTAATCGACAGAGGCAACGCTCTTGATGATCTCTTCTGTGAACCCTTTCTCGGATCCTCGTGGATTCTGCCGTCGGATTTCCCTCTCCGCCGGGAATTTGGCTCGTTCCGCCAGTCCTTTCCAGGGTCTTTTGGCAACATTTTGAGAAATGGAATGTTGGAGAAAACAATCGAAGATTCGCCTGTGAGTTATTTGTATCTCCATCTATCTCACGACGCCAGCGATTACGACAAACTGTTTTACTGCGACCGGCAGCAGAATCTTCTGAAGAAGGTCCCATGGCTGATTATGGAGACGAACAACTACCTGGTTCCCGGAATTTTTCTTGGTTCGTTTTTCAGAGAAGAGCTCAATAAACTCTTTCCGGCGAAGGACACTGTTTTCCACCATCTCGGCCGGTACCTCTTCCACCCGACGAACGGCGTCTGGGGGCTGATTTCGAGATCTTACAAGCCGTATCTCGCCAGAGCGAAAGAAATGTTAGGGATTCAGATCCGGAATTTCGGGTCGGAATCCGGTTCGTTTCAGGACCAGATGAATCAACTTCTAGCTTGCACACAGAAGAAGAAATTACTGCCGGATGTCGAGCAATCGTCGCCGGAGAAGTCGAATTCCACAGCGTCTCAGACGGTGAAAGTTGTGCTGGTGACGTCTCTGAGCTCTGAATACTCGGAAACCCTAAAGGAAATGTACTGGGAGCATGGGGGCATCGACGGCGAGGTGGTGGCGGTGTACCAACCGAGCCACGAGGGGATTCAAAGCTCTAACAAAAAAATGCACAACCGGAAGGCACTGGCAGAGATGTACCTTCTGAGCTTGAGCGACGTGTTGGTGACGAGCGATTGGTCGACGTTTGGGTATGTAGCGCAGGGACTTGCCGGAGTGAAGCCATGGATGCTTTACAAGGCAGAGGATAAGGTGTTTCCGCCATTGAATGAATGGCTGAAGTACAGAACCAGGAATGAGACAGGCGACTGGCCATGCCGGCGGGCGGTGTCGATGGAGCCGTGCCTGCACGTGCCGCCCGTGTGCGATTGCGATGAGATGCAGAGAAGAGATGGATGGAATGAATTGCCGTTTGTGACGCATTGTGAAGATGCGAGTTGGGGCCTTAAGTTAGTTAATGAATTCAACTGA 1812 50.11 MSLLCSLTSNDSRNFDARLLLEMSRHGSENGTQLLLEMKQASSKSIHYSLLSATDSHGGSDDEDDEDDNEEDEVVPVMAVVILQQFWLPSLNFNRLWRTVSQHVGSTNDSHRNDDEFINGLLPPGFDQKSCLSRYQLNLYRKPSPYIPSSPLLSKLRRYESLHRRCGPNSPSFRRALVGLTSPTNSTSLPEDCKYAVVLTRDGLGNRILAIISAFFYALMSDRVFLIDRGNALDDLFCEPFLGSSWILPSDFPLRREFGSFRQSFPGSFGNILRNGMLEKTIEDSPVSYLYLHLSHDASDYDKLFYCDRQQNLLKKVPWLIMETNNYLVPGIFLGSFFREELNKLFPAKDTVFHHLGRYLFHPTNGVWGLISRSYKPYLARAKEMLGIQIRNFGSESGSFQDQMNQLLACTQKKKLLPDVEQSSPEKSNSTASQTVKVVLVTSLSSEYSETLKEMYWEHGGIDGEVVAVYQPSHEGIQSSNKKMHNRKALAEMYLLSLSDVLVTSDWSTFGYVAQGLAGVKPWMLYKAEDKVFPPLNEWLKYRTRNETGDWPCRRAVSMEPCLHVPPVCDCDEMQRRDGWNELPFVTHCEDASWGLKLVNEFN 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2484209 2486952 - CmoCh16G005140.1 Cmo16g00514 399549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00514 603 Gene3D - 191 239 - -
Cmo16g00514 603 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE 536 601 - -
Cmo16g00514 603 Pfam Xyloglucan fucosyltransferase 103 571 IPR004938 GO:0008107|GO:0016020|GO:0042546
Cmo16g00514 603 PANTHER FUCOSYLTRANSFERASE 2-RELATED 102 534 IPR004938 GO:0008107|GO:0016020|GO:0042546
Cmo16g00514 603 PANTHER FUCOSYLTRANSFERASE 2-RELATED 536 601 IPR004938 GO:0008107|GO:0016020|GO:0042546
Cmo16g00514 603 Gene3D - 372 530 - -
Cmo16g00514 603 MobiDBLite consensus disorder prediction 52 72 - -
Cmo16g00514 603 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE 102 534 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00514 K13681 FUT; xyloglucan fucosyltransferase [EC:2.4.1.-] - csv:101222105 844.343
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00838 Cmo-Chr1:4470695 Cmo16g00514 Cmo-Chr16:2484209 1.83E-167 dispersed
Cmo13g01199 Cmo-Chr13:9446633 Cmo16g00514 Cmo-Chr16:2484209 1.35E-167 dispersed
Cmo16g00514 Cmo-Chr16:2484209 Cmo04g01754 Cmo-Chr4:8850998 1.42E-169 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo13g01199 . 119 587 Xyloglucan Fucosyltransferase1 AT1G14080 54.6 6.8e-151 531.6
Cmo04g01754 . 100 551 Xyloglucan Fucosyltransferase1 AT1G14080 55.5 2.2e-149 526.6
Cmo01g00838 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14080 52.3 2.9e-149 526.2
Cmo13g01199 . 119 588 Xyloglucan Fucosyltransferase1 AT1G14100 57.8 2.0e-160 563.1
Cmo04g01754 . 81 542 Xyloglucan Fucosyltransferase1 AT1G14100 58.0 2.9e-159 559.3
Cmo01g00838 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14100 54.5 6.1e-157 551.6
Cmo13g01199 . 119 589 Xyloglucan Fucosyltransferase1 AT1G14110 52.1 3.9e-134 475.7
Cmo04g01754 . 81 541 Xyloglucan Fucosyltransferase1 AT1G14110 52.6 9.7e-133 471.1
Cmo19g00620 . 1 524 Xyloglucan Fucosyltransferase1 AT1G49710 63.2 5.6e-187 651.4
Cmo16g00380 . 5 515 Xyloglucan Fucosyltransferase1 AT1G49710 62.7 5.5e-182 634.8
Cmo15g00565 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.4 6.6e-167 584.3
Cmo04g02596 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 68.3 1.7e-162 569.7
Cmo04g01754 . 6 552 Xyloglucan Fucosyltransferase1 AT2G03210 55.7 3.6e-174 609.0
Cmo13g01199 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.9 1.3e-168 590.5
Cmo01g00838 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.9 1.8e-165 580.1
Cmo04g01754 . 36 552 Xyloglucan Fucosyltransferase1 AT2G03220 62.8 1.4e-191 666.8
Cmo01g00838 . 51 580 Xyloglucan Fucosyltransferase1 AT2G03220 58.8 1.6e-187 653.3
Cmo13g01199 . 119 585 Xyloglucan Fucosyltransferase1 AT2G03220 64.9 1.7e-184 643.3
Cmo16g00514 . 108 599 Xyloglucan Fucosyltransferase1 AT2G03220 52.8 1.0e-149 527.7
Cmo04g01754 . 101 551 Xyloglucan Fucosyltransferase1 AT2G15350 53.6 9.8e-147 517.7
Cmo13g01199 . 99 586 Xyloglucan Fucosyltransferase1 AT2G15350 50.7 2.8e-146 516.2
Cmo13g01199 . 110 587 Xyloglucan Fucosyltransferase1 AT2G15370 51.0 5.4e-140 495.4
Cmo04g01754 . 101 551 Xyloglucan Fucosyltransferase1 AT2G15370 52.4 1.6e-139 493.8
Cmo04g01754 . 92 551 Xyloglucan Fucosyltransferase1 AT2G15390 53.1 1.2e-142 504.2
Cmo13g01199 . 119 587 Xyloglucan Fucosyltransferase1 AT2G15390 51.9 1.2e-142 504.2
Cmo01g00838 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 51.3 4.9e-141 498.8
Cmo19g00620 . 1 524 Xyloglucan Fucosyltransferase1 AT3G19280 62.7 1.0e-185 647.1
Cmo16g00380 . 5 515 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 5.7e-184 641.3
Cmo04g00523 . 48 186 Xyloglucan Fucosyltransferase1 AT3G19280 57.6 3.1e-36 150.6
Cmo04g01754 . 6 552 Xyloglucan Fucosyltransferase1 AT2G03210 55.7 3.6e-174 609.0
Cmo13g01199 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.9 1.3e-168 590.5
Cmo01g00838 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.9 1.8e-165 580.1
Cmo04g01754 . 36 552 Xyloglucan Fucosyltransferase1 AT2G03220 62.8 1.4e-191 666.8
Cmo01g00838 . 51 580 Xyloglucan Fucosyltransferase1 AT2G03220 58.8 1.6e-187 653.3
Cmo13g01199 . 119 585 Xyloglucan Fucosyltransferase1 AT2G03220 64.9 1.7e-184 643.3
Cmo16g00514 . 108 599 Xyloglucan Fucosyltransferase1 AT2G03220 52.8 1.0e-149 527.7
Cmo04g01754 . 6 552 Xyloglucan Fucosyltransferase1 AT2G03210 55.7 3.6e-174 609.0
Cmo13g01199 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.9 1.3e-168 590.5
Cmo01g00838 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.9 1.8e-165 580.1
Cmo04g01754 . 92 551 Xyloglucan Fucosyltransferase1 AT2G15390 53.1 1.2e-142 504.2
Cmo13g01199 . 119 587 Xyloglucan Fucosyltransferase1 AT2G15390 51.9 1.2e-142 504.2
Cmo01g00838 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 51.3 4.9e-141 498.8
Cmo13g01199 . 110 587 Xyloglucan Fucosyltransferase1 AT2G15370 51.0 5.4e-140 495.4
Cmo04g01754 . 101 551 Xyloglucan Fucosyltransferase1 AT2G15370 52.4 1.6e-139 493.8
Cmo13g01199 . 119 587 Xyloglucan Fucosyltransferase1 AT1G14080 54.6 6.8e-151 531.6
Cmo04g01754 . 100 551 Xyloglucan Fucosyltransferase1 AT1G14080 55.5 2.2e-149 526.6
Cmo01g00838 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14080 52.3 2.9e-149 526.2
Cmo13g01199 . 119 588 Xyloglucan Fucosyltransferase1 AT1G14100 57.8 2.0e-160 563.1
Cmo04g01754 . 81 542 Xyloglucan Fucosyltransferase1 AT1G14100 58.0 2.9e-159 559.3
Cmo01g00838 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14100 54.5 6.1e-157 551.6
Cmo13g01199 . 119 589 Xyloglucan Fucosyltransferase1 AT1G14110 52.1 3.9e-134 475.7
Cmo04g01754 . 81 541 Xyloglucan Fucosyltransferase1 AT1G14110 52.6 9.7e-133 471.1
Cmo04g01754 . 101 551 Xyloglucan Fucosyltransferase1 AT2G15350 53.6 9.8e-147 517.7
Cmo13g01199 . 99 586 Xyloglucan Fucosyltransferase1 AT2G15350 50.7 2.8e-146 516.2
Cmo19g00620 . 1 524 Xyloglucan Fucosyltransferase1 AT3G19280 62.7 1.0e-185 647.1
Cmo16g00380 . 5 515 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 5.7e-184 641.3
Cmo04g00523 . 48 186 Xyloglucan Fucosyltransferase1 AT3G19280 57.6 3.1e-36 150.6
Cmo19g00620 . 1 524 Xyloglucan Fucosyltransferase1 AT1G49710 63.2 5.6e-187 651.4
Cmo16g00380 . 5 515 Xyloglucan Fucosyltransferase1 AT1G49710 62.7 5.5e-182 634.8
Cmo15g00565 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.4 6.6e-167 584.3
Cmo04g02596 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 68.3 1.7e-162 569.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007613 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 2 2 2 2 1 1 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00514 Cmo_Chr16 FPKM 2.13913 3.243458 15.072556 12.928726 0.130742 0.3117 0.18528 0.206379 0.212124 0.294942