Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00528 ATGGAAGTCGCACCTCAGAGTTCGGAAGTTCCAATTACAAAGGTGGCTGACGATTCTGGAAATGATGCCATTGGTGATAAGGTCACGAATGGGGATGTAACTCAAGTAGGAAAAGATATTAAGAGCGAAGAGGAGGACAATGCTCTGGGCGGTGAGTTCATAAAAGTAGAAAAGGAGCCTCTGGAGGCGAAGGATACTCATCCAGCCAAAACAGTATCCGCAGAGGAGGATAAACCAACTATTGTTGAAAGAAGTTCAAGCAATTCAAGCAGAGAATTATTGGAGGCCCAAGAGAAGTCGAGAGATCTTGAGCTTGAAATTGAGAGATTAGCTGGAAGTTTGAAGCATTTAGAGTCAGAGAATTCAAGGCTACAGGATGAGGTATCACTCACGAAGGAGAAGCTTGAGGCAAGTGAAAAGAAGTTTGAAGTGCTTGAACTCGATCACAAGAAATCGAAAGAGCAGATTGTTGAATCTGAAGATAAATATAGTTCGCAGCTCAACAGTTTGCAAGAGGCACTGCAAGCTCAAGAAGCGAAGAACAAGGAGTTGATAGCGGTGAAAGAAGCATTTGATAGTTTGACAAATGATTTTGAGAATTCCCGCAAGCAGATTCAAGAGTTGGAACAAAAACTGAAGATCTCTGGTGATGAAACTTTGAAATTTGAGGAGCTTCACAAACAAAGTGGCTTGAATGCTGAATCTGAGGCTAAAAAAGCATTAGAATTTGAGAGGCTTCTTGAATCAGAAAGACTGAGTGCAAAAGAAAGAGAAGATCAAATCTCTTCCCTGCAAGAAAAAATCAAGGACTTAAATGACGAGATTGCTGAAAGCCAAAAGGTAAAAGAAGAACTTAGAACTGCAGCAACTGAGCTTTTTGCTGTCCAGGGAGATCTAGAGCTTTCAAAATCTCAAGTGCTAGACTTGGAGAAGAAACTTTCTACGAAGGAAGGTTTGGTTGAAGAACTAACACAAGAACTGGACGCCCGAAGGGCTTCCGAATCTAAGATCAAGGAAGATATCTCAGCCGTTGAAAGCCAGTTTGCTTCATCTAAAGAGGATCTTCGTGTAAAGGTTTCTGAACTGGAAGAAATAAGATTGAAGCTTCAGGAAGAAAGTAACCAAAAAGAATCTGCTGAATCTGCTCTAAGAATTCTGGAAGCACAAATCTCTGATACCCAAAAGGAACTTTCAGCAGCTATCAAAGATAAAGAAGAGCTTGAAGTGACTGTAGCAGATCTCTCTAGCAATGCCAAACAAATGAAAGATTTATGCAACAGTCTAGAGGAAAAACTGAAGCTTTCTGATGAGAATTTTGGAAAAGCTGATTCTCTTTTATCCCAAGCTCTGTCCAACAATAAGGAGCTGGAACAGAAGTTGAAAAATTTAGAGGATCTCCATAATGAAACTGGAATTGTCGCTCAATCTGCCACTCAGAAGAATCGTGAACTTGAGGAAATTGTCCGATCTTCAACTGCCTCATCGGAAGATGCAAAATCGCAATTAAGAGAACTCGAGACTCGATTTATAGCAGCCGAACAAAAGAATGTGGAGCTTGAACAACAGCTAAATTTGTTACAATTGAAAAACGATGATGTCGAGAGGGAAGCGACTGAATTATCTGAGAAAATAAAAGAACTTAGTACAAAGTTGATCGAGATTGAGCAGGAAAAGCAGCAACTGAATGAACAAAAGCAGGAATACCAGGATAAGGTACTGCAACTGGAATCTGCAATACAGCAGTCGACTTTGCAGCACGAGGAACTGGAGAAGGAGCTGAAAACCACAATTGGGAAATGTTCTGAATACGAGGAACGAGCTAACATGAATCACCACCGTAGCATTGAACTTGAAGAACTGATCCTGACATCTCATAACAAAATTGAAGTTGCAGATAAAAGGGCAAGTGAGTTGGAGTTGTTGCTTGAAACAGAAAAGTATAGAATTCAGGAGCTTGAAGAACAAATAAATACTTTAGAAAAGAAATGTGGGGAAGCTGAAGCAGAAACCAAGAAGAACTTTGACCAGGCATCTGTCTTGGCTTCTGAAATAAAGTCCTATGAAGAAAAAGTAGCAAGCCTTGAGACTAAATTGCATGTTGCCAACGTAAAGGAAAAGGAATTAAATGAATCTCTGGATATAGCGACAGAAGAGAAGAAAAAATTGGAAGATTCACTGAACTTATCTAGCAGTAGGCTAGCTGAATCAGAAAGTTTGGTCGAAGTTCTAAGGAACGATCTGAACGATACCCAAAAGAGACTCGAAAGTATAGAGAACGATCTCCAGGCTACTGGATTCAGAGAGACTGAGGTGCTGGAAAAGCTGAAATCTGCGGAGGAGAAACTCGAACACCAATTACGATCAATAGAGGAAACTACTGCAAGAAACACGGAACTTCAGTCGTTACATGACTCATTAGCCAAGGATTCAGAAACTAAAATGCTGGAAGCAGTAGCAAAGTTCACCAACAAAGAATCTGAGGCTAACTCTCTAGTGGAGAAAATTAATGTTCTTGAAGAACAAATAAAAGCTTATGAGGATCAGATATCTGAAACCAATGAAAGATCTGCAGCTTTAAAAGAAGGATTGGAACAGACTTTGACAAAATTGAGTTCTTTGGAGAGTACAAATGGTGAACTCAAAAAGTATAGTTTGGAAGTTGAAAATAAAGTTTCTCAGATTTCTTCCGAGAACGAACTCTTAGTCGATACAAACATTCAACTCAAAACAAAGCTTAATGAACTTCAGGAGTTATTGAGCTCTGCACTTTCTGAAAAGGAAACTTCTTATCAACAGCTCGCTTCTCATAAGAGCTCTATTGCTGAATTAACCGAAAAGCACTCGAGAGCCATCGAGTTCCAGTCCGTAACCGAAGCTCGTCAAGTCGAGACAGATCAGAAATTGCAGGAAGCCATTCAAAAGTTCGATCAGAGAAATTTGGAGGCTGAGGAATTGAGTGGGAAACTAAAAATAGCAGAGAACGAGATAAAATTGTTTGAATCCAAGGCTTTGGAAGCTTCTGCAGAAGCTGAAGCTCACAAGATTCAGCTAGAAGAGAGTCTTTTGAAAGTAAAACAACTAGAAAGCATGGTAGAAGAGCTGCAAACCAAGAGAGTTGATGCTGAACAGGAGAGTGCAGGGCTAAATGAGGCTAAATTGAAGCTTACTCAAGAACTGGCCTTAATCGAATCAAATTTGAGTGATCTCCAAAACAAGTTATCTGCCGCAAATGCCGAAAGGGATGAAACTACTGAACGACTCCAGGCTGCAGAGAAGACTGTAAATGAGTTGAAATCACAGCTCTCTTCTGAAGAACAGAGGCTGCAGTCTCAGATCGCTTCAATTATGGAAGACAACGACGTCCTCAATGAAACATACCAGAAGACCAAAAACGAATTTCAGTCAGAGATATTAAAGCTGGAAGGAAAATTGAAAGAACAGAGCAAAGTAGAAGAATCATTAAGATCTGAAATTGAAAATCTCAAGGCAGAGACCGCAGAGAATAATGGTTTAAAAATACGCCAAAAGGAGCTTGAAGATGAGGTTCAAAGTGTCCGATCAGCCGCTGCAGGAAAAGAGACAGAATTGATTTCCAAATTGGAAGATTATGGACTAAAAATTCAAGATAGAGATCAACTAAATGAACAAGTTGTACAACTAAAGGCGGAGATTGCTGAACAGGTTAGTCACCATGCCATCTCTTTTTACTCTGAAAATGAAGTCTATAAAATCATGAAAGAGAAAGATTCTCAAAAAGAAATCGAACGAGAGGGTTCGGTTAAGCAGTCTCTTGAAGATTTGGAGGCGAAGGGCAAAGAAATTACTGCTCTAGAAACACAAATCAAGGACCTCCAGCAGAAATTGCTCCTGGCTGAAGCTAAGCCCGTAGAGAAGGCTGATGGAGGCAGCAGCATGGCGGAGCCGAAGGAGGGAGTAGAAATCAAATCCCGAGACATTGGATTAACCTTTTCAACTCCAACAAAAAGGAAGCACAGGAAGAACAAAGAGGCATCATCGCCATCTACACCATCTTCATCTTCTGCCGAAACACACGCCCAAATTGCTGAGGTTTCTCCAATCTCTTCCTTGAAGTTGGTTTTGGTGGTAGCTCTGATCTCTGTTATAGTTGGTATATATCTGGGGAAAAGGTATTAA 4155 40.39 MEVAPQSSEVPITKVADDSGNDAIGDKVTNGDVTQVGKDIKSEEEDNALGGEFIKVEKEPLEAKDTHPAKTVSAEEDKPTIVERSSSNSSRELLEAQEKSRDLELEIERLAGSLKHLESENSRLQDEVSLTKEKLEASEKKFEVLELDHKKSKEQIVESEDKYSSQLNSLQEALQAQEAKNKELIAVKEAFDSLTNDFENSRKQIQELEQKLKISGDETLKFEELHKQSGLNAESEAKKALEFERLLESERLSAKEREDQISSLQEKIKDLNDEIAESQKVKEELRTAATELFAVQGDLELSKSQVLDLEKKLSTKEGLVEELTQELDARRASESKIKEDISAVESQFASSKEDLRVKVSELEEIRLKLQEESNQKESAESALRILEAQISDTQKELSAAIKDKEELEVTVADLSSNAKQMKDLCNSLEEKLKLSDENFGKADSLLSQALSNNKELEQKLKNLEDLHNETGIVAQSATQKNRELEEIVRSSTASSEDAKSQLRELETRFIAAEQKNVELEQQLNLLQLKNDDVEREATELSEKIKELSTKLIEIEQEKQQLNEQKQEYQDKVLQLESAIQQSTLQHEELEKELKTTIGKCSEYEERANMNHHRSIELEELILTSHNKIEVADKRASELELLLETEKYRIQELEEQINTLEKKCGEAEAETKKNFDQASVLASEIKSYEEKVASLETKLHVANVKEKELNESLDIATEEKKKLEDSLNLSSSRLAESESLVEVLRNDLNDTQKRLESIENDLQATGFRETEVLEKLKSAEEKLEHQLRSIEETTARNTELQSLHDSLAKDSETKMLEAVAKFTNKESEANSLVEKINVLEEQIKAYEDQISETNERSAALKEGLEQTLTKLSSLESTNGELKKYSLEVENKVSQISSENELLVDTNIQLKTKLNELQELLSSALSEKETSYQQLASHKSSIAELTEKHSRAIEFQSVTEARQVETDQKLQEAIQKFDQRNLEAEELSGKLKIAENEIKLFESKALEASAEAEAHKIQLEESLLKVKQLESMVEELQTKRVDAEQESAGLNEAKLKLTQELALIESNLSDLQNKLSAANAERDETTERLQAAEKTVNELKSQLSSEEQRLQSQIASIMEDNDVLNETYQKTKNEFQSEILKLEGKLKEQSKVEESLRSEIENLKAETAENNGLKIRQKELEDEVQSVRSAAAGKETELISKLEDYGLKIQDRDQLNEQVVQLKAEIAEQVSHHAISFYSENEVYKIMKEKDSQKEIEREGSVKQSLEDLEAKGKEITALETQIKDLQQKLLLAEAKPVEKADGGSSMAEPKEGVEIKSRDIGLTFSTPTKRKHRKNKEASSPSTPSSSSAETHAQIAEVSPISSLKLVLVVALISVIVGIYLGKRY 1384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2551035 2559042 - CmoCh16G005280.1 Cmo16g00528 399563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00528 1384 Coils Coil 975 1195 - -
Cmo16g00528 1384 Coils Coil 1267 1294 - -
Cmo16g00528 1384 PANTHER EARLY ENDOSOME ANTIGEN 1 1384 - -
Cmo16g00528 1384 Coils Coil 446 473 - -
Cmo16g00528 1384 MobiDBLite consensus disorder prediction 1 101 - -
Cmo16g00528 1384 Coils Coil 898 925 - -
Cmo16g00528 1384 Coils Coil 306 326 - -
Cmo16g00528 1384 Coils Coil 635 669 - -
Cmo16g00528 1384 Coils Coil 772 795 - -
Cmo16g00528 1384 Coils Coil 821 862 - -
Cmo16g00528 1384 Coils Coil 677 760 - -
Cmo16g00528 1384 MobiDBLite consensus disorder prediction 1297 1350 - -
Cmo16g00528 1384 MobiDBLite consensus disorder prediction 37 82 - -
Cmo16g00528 1384 Coils Coil 86 155 - -
Cmo16g00528 1384 Coils Coil 1210 1230 - -
Cmo16g00528 1384 Coils Coil 191 218 - -
Cmo16g00528 1384 Coils Coil 352 438 - -
Cmo16g00528 1384 Coils Coil 160 187 - -
Cmo16g00528 1384 SUPERFAMILY Tropomyosin 519 764 - -
Cmo16g00528 1384 Coils Coil 247 288 - -
Cmo16g00528 1384 Coils Coil 495 606 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00528 - - K20283 cpep:111810395 2051.56
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1051 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo16g00528 . . . . Cpe14g00411 Cpe01g00555 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007249 2 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00528 Cmo_Chr16 FPKM 27.063705 28.978523 8.488818 8.139915 17.365484 17.366879 17.503304 2.654253 2.612776 2.780698