Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00530 ATGCAGCCATTTGAAGCTTTGAGAACACGTCCTACAATGGCTATCATCAATCACCTTCTTCGTTCCGCTCTACGGTCTCGGTCGGTTGCATCTTCAAGACGAGCTTCGGAATATGTCGTCCCGACTCCCTTCCTGTCCTGCTTATATGGAACACAGGCGTCGGTGCAAACAGAGGAATCAGACAACATTGGGTTTAAGGGACATGATATCATTACACCTTTTACTACAAGATGGCAGTGCACAAATGAAAATCCACTAGTTATAGAAAGATCAGAGGGTTCATATGTGTATGACACTAATGGAAGGAAGTACCTTGATGCTCTGGCTGGTCTATGGTGCACATCCTTAGCTGCAACAAAACAACTAAATACCTTACCGTTTTACCACTCCTTTTGGAATCATACTAACATGCCTTCATTGGAGCTGGCAAAGGAACTGCTTGAAATGTTCACAGCTAGAAAAATGGGGAAAGTCTTTTATACAAACAGCGGTTCAGAAGCCAATGATACTCAGGTCAAGCTGGTATGGTACTATAACAATGCACTTGGAAGACCAAAAAAGAAAAAGTTCATTGCTCGCTCACTGGCCTACCATGGTTCAACATTAATAGCAGCCAGTCTTACTGGCCTAACAGGTATGCACCAGCAGTTCGACATTCCAGCTCCGTTCGCCCTGCACACGGATTGTCCACATTACTGGCGTTACCATCTTCCAGGTGAAACGGAGGAAGAGTTCTCAACCAGATTAGCTAAAAACTTGGAGGACCTTATACTTAAGGAGGGGCCAGAGACGATTGCTGCATTCATCGCTGAACCTGTCATGGGGGCTGGTGGTGCGATCCTTCCACCTACAACTTATTTTGAGAAGATCCAAGCTGTGCTCAAGAAGTATGATATACTTTTTATTGCAGATGAGGTAATCTGTGCCTTTGGAAGGCTAGGGGCGATGTTTGGATGCGATAAGTACAATATTAAACCAGACCTTGTATCTATTGCAAAGGCACTTTCCTCGGCATATATGCCTATTGGAGCTGTTCTTGTGAGCCCTGAAATCTCTGATGTCATTCACTCTCAAAGCGACAAGCTAGGTTCCTTTGCTCATGGATTTACTTATTCCGGACACCCAACCGCATGTGCTGTTGCACTTGAAACACTCAAGATCTACAAGGAAAGGAATATTGTGGAGCAAGTAAATCAAATCTCCCCGAGGTTTCAAGATGGCATAAAAGCTTACTCTGATAGCCCTATCATTGGAGAGATAAGGGGGACTGGCTTGGTGTCAGGCACAGATTTTGTAGACAATAAATCACCAAATGATCCATTCCCTCCAGAATGGGGAGTTGGTGCATATTTTGGATCTGAATGTCGGAAAAATGGTTTGATAGTACGTGCTGCAGGGAATAATATAACAATGGCTCCACCATTTATCATCTCTCCTCAAGAAGTTGATGAGATAATCAGCATTTATGGAAAGGCACTGAAGGCTACTGAAGAGAGAGTGAAGGAATTGAAGGCTCAGAGACTACACATGCTCTATCTCAGTAGCTCCAACTATTATAAAGACTTGGAGAAAGGAGAGGGTGTGTGTAACCATTTGAAGTCTGAGAACACATTCTTGAGGAGACCATCCCATAATGGCCATCATCAATCACCTTCTTCGTTCCACTCTCAGTCTGTCGCACATGAATATGTCATCCTAGCTCCCTTCCTGTCCCGTTTACAAAGTACACAGGCTTCACCACACAGAGAGGATTCAGGGTTTAAGGGGCATGATATGCTTGCACCTTTCACTACAGGATGGCAGTGCACAAATGAAAATCCACTAGTTATAGAAAGATCAAAGGGTTCATATGTATATGACTCTAATGGAAGGAAGTACCTTGATTCTCTTGCTGGTCTATGGTGCACATCCTTAGGGGGAAATGAACCACGACTTGTGGCAGCTGCAACAAAACAACTAAATACCTTGCCGTTTTACCACTCCTATTGGAATCACACTACCAAGCCTTCATTGGATCTGGCAAAGGAACTACTTGAAATGTTTACAGCTAGAAAAATGGGGAAAGTCTTTTTCACGAACAGTGGTTCAGAAGCCAATGACACTCAGGTCAAGCTGGTACGGTACTATAACAATGCACTTGGAAGACCAAAAAAGAAAAAGTTCATTGCTTGCTCAAAGGCCTTCCATGGTTCAACATTAATAGCAGCCAGTCTTACTGGTCTTACAGATTTGCATCATAAGTTTGACATTCCAGCTCCATCTGTTCTGCACACTGATTGTCCACACTTCTGGCGTTACCATCTTCCAGGTGAAACAGAGGAAGAGTTCTCAACCAGATTAGCCAAAAACTTAGAGGATCTTATACTCAAGGAGGGACCAGAGACGATTGCTGCGTTCATCGCTGAACCTGTCATGGGCGCTGGTGGTGCTATTCTTCCACCTACAACTTATTTTGAGAAGATCCAAGCTGTACTCAAGAAGTATGATATACTTTTTATTGCTGATGAGGTAATGTGTGCCTTTGGAAGACTAGGGGCAATGTTTGGATGCGATAAATACAATATTAAACCAGACCTTGTATCTCTTGCAAAGGCACTTTCCTCGGCGTACATTCCCATAGGAGCTGTTCTCGTGAGCCCCGAAATCTCTGATGTCATTCACTCTCAAAGTGACAAGCTAGGTTCCTTTTCTCATGGGTTTACTTATTCTGGACACCCCACAGCATGTGCTGTTGCACTTGAAACTCTCAAGATCTACAAGGAAAGGAATATTGTGGAGCAAGTAAAACGCATCTCCCCAAGGTTTCAAGTTGGCATAAAAGCTTTCTCTGATAGCCCTATCATTGGAGAGATAAGGGGGACTGGCTTGGTGTCAGGAACAGATTTTGTAGACAATAAATCACCGAATGATCCATTCCCTCCTGAATGGGGAGTTGGAGCATATTTTGTAGCTGAATGTCGGAAAAATGGTTTGATAGTACGTCCTGGAGGGGATACTATAACGATGGCTCCACCATTTATCATCTCCCCTCAAGAAGTTGATGAGTTAATCAGCATTTATGGGAAGGCACTGAAGGCTACTGAAGAGAGAGTGAGGAAATTGAAGGCTCAGAAATCTTCTTCCATTGTTTCAGATTACCGAGTTCCTATCAGAAATCAAGATCAAATGCTTGAATTGATACTGTATGAACTGTTGGCAGATATAAATTCTATGAACTTTATAATTTGTTTTTTCTCCTTGTTTAAGCCATGCCAATTAAGAATCTGCTTATTGGTAGTATTTCCTGTCCGATTATTATGTTTCTCTCTTCTTTTGTGGCTGATTAGGCGAAAAGGTATCACGGGAACGTCTCGTCCTCGCTCCTTTCCTGTCCCGCTTACATGGTACAGAGGCATCTGCACAAAAAGAGGATTCGAGGTACAAGGGTTCAAGGGGCATGATATGCTTGCACCTTTTACTGCAGGATGGCAGACCACCGATGTTAGTCCACTGATTATAGAAAGATCTGAGGGTTCATATGTATATGACATTAATGGAAGGAAGTACCTTGATTCTCTTGCCGGTCTATGGTGCACATCCTTGGGTACCACAATCTGCACTAACACGAACTCTTGTTCTGCATATATTGAAAAGTTTAGTCTCTGTAAGTTAGTAAAGGCAATGCTGGAATTTGTAGGGGGAAATGAACCACGACTTGTGGAAGCTGCAACAAAACAACTAAATGTCTTGCCATTTTACCACTCCTTTTGGAATCGTACTACGAGGCCTTCTTTGGTACGTTATGAGCTGGCAAAGGAACTGCTTGAAATGTTCACAGCTAGAAAAATGGGGAAAGTCTTTTTTACAAACAGTGGTTCAGAAGCTAATGATACTCAGGTCAAACTGGTATGGTACTATAACAATGCACTTGGAAGACCAGATAAGAAGAAGTTCATAGCTCGCTCAAAGGCATATCATGGTTCAACATTAATATCAGCCAGTCTTACTGGCCTTCCAGCTATGCACCAGAAGTTTGACATTCCTGCTCCATTCGTTCTGCACACTGATTGTCCACATTACTGGCGTTACCATCTTCCAGGTGAGACAGAGGAAGAGTTCTCAACCAGATTAGCCAAAAACTTGGAAGACCTTATACTCAAGGAGGGACCAGAGACAATTGCTGCGTTCATCGCCGAACCTGTCATGGGTGCTGGTGGTGTGATTCCTCCACCAGCTACTTATTTTGAAAAGGTAAGTTGTTTGTATCATGAAATTTTGAAGTATGCAACAATCCAACCTGTGCTCAAGAAGTATGATATACTTTTCATTGCCGACGAGGTAATCTGTGCCTTTGGAAGACTAGGGACAATGTTTGGATGCGATAAATACAATATTAAACCGGACCTTGTATCTCTTGCAAAGGCACTTTCCTCGGGATACATGGCTATTGGAGCTGTTCTCATGAGCCCTGAAATCTCTGATGTGATTCACTCTCAAAGCAACAAGCTTGGTTCCTTTGCTCATGGATTTACTTATTCTGGACACCCAGTCTCATGTGCAGTCGCAATTGAAACACTCAAAATCTACAAGGAAAGGAATATAGTGGAGCAAGTAAATAGCATCTCCTCAAGATTTCAAGATGGCCTAAAAGCTTACTCTGATAGCCCTATCGTTGGAGAGATACGGGGGACTGGCTTGATCTTAAGCACAGAGTTTGCAGACAATAAATCACCAAATGATCCGTTCCCTCCTGAATGGGGTGGATCGTCATCGGGTCATACTTGTGCTTACAGCTTGTTATCTGCCTGA 4788 43.09 MQPFEALRTRPTMAIINHLLRSALRSRSVASSRRASEYVVPTPFLSCLYGTQASVQTEESDNIGFKGHDIITPFTTRWQCTNENPLVIERSEGSYVYDTNGRKYLDALAGLWCTSLAATKQLNTLPFYHSFWNHTNMPSLELAKELLEMFTARKMGKVFYTNSGSEANDTQVKLVWYYNNALGRPKKKKFIARSLAYHGSTLIAASLTGLTGMHQQFDIPAPFALHTDCPHYWRYHLPGETEEEFSTRLAKNLEDLILKEGPETIAAFIAEPVMGAGGAILPPTTYFEKIQAVLKKYDILFIADEVICAFGRLGAMFGCDKYNIKPDLVSIAKALSSAYMPIGAVLVSPEISDVIHSQSDKLGSFAHGFTYSGHPTACAVALETLKIYKERNIVEQVNQISPRFQDGIKAYSDSPIIGEIRGTGLVSGTDFVDNKSPNDPFPPEWGVGAYFGSECRKNGLIVRAAGNNITMAPPFIISPQEVDEIISIYGKALKATEERVKELKAQRLHMLYLSSSNYYKDLEKGEGVCNHLKSENTFLRRPSHNGHHQSPSSFHSQSVAHEYVILAPFLSRLQSTQASPHREDSGFKGHDMLAPFTTGWQCTNENPLVIERSKGSYVYDSNGRKYLDSLAGLWCTSLGGNEPRLVAAATKQLNTLPFYHSYWNHTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVRYYNNALGRPKKKKFIACSKAFHGSTLIAASLTGLTDLHHKFDIPAPSVLHTDCPHFWRYHLPGETEEEFSTRLAKNLEDLILKEGPETIAAFIAEPVMGAGGAILPPTTYFEKIQAVLKKYDILFIADEVMCAFGRLGAMFGCDKYNIKPDLVSLAKALSSAYIPIGAVLVSPEISDVIHSQSDKLGSFSHGFTYSGHPTACAVALETLKIYKERNIVEQVKRISPRFQVGIKAFSDSPIIGEIRGTGLVSGTDFVDNKSPNDPFPPEWGVGAYFVAECRKNGLIVRPGGDTITMAPPFIISPQEVDELISIYGKALKATEERVRKLKAQKSSSIVSDYRVPIRNQDQMLELILYELLADINSMNFIICFFSLFKPCQLRICLLVVFPVRLLCFSLLLWLIRRKGITGTSRPRSFPVPLTWYRGICTKRGFEVQGFKGHDMLAPFTAGWQTTDVSPLIIERSEGSYVYDINGRKYLDSLAGLWCTSLGTTICTNTNSCSAYIEKFSLCKLVKAMLEFVGGNEPRLVEAATKQLNVLPFYHSFWNRTTRPSLVRYELAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPDKKKFIARSKAYHGSTLISASLTGLPAMHQKFDIPAPFVLHTDCPHYWRYHLPGETEEEFSTRLAKNLEDLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKVSCLYHEILKYATIQPVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSLAKALSSGYMAIGAVLMSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVAIETLKIYKERNIVEQVNSISSRFQDGLKAYSDSPIVGEIRGTGLILSTEFADNKSPNDPFPPEWGGSSSGHTCAYSLLSA 1595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2567243 2583279 - CmoCh16G005300.1 Cmo16g00530 399565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00530 1595 SUPERFAMILY PLP-dependent transferases 1225 1575 IPR015424 -
Cmo16g00530 1595 CDD OAT_like 85 493 IPR005814 GO:0008483|GO:0030170
Cmo16g00530 1595 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 832 869 IPR005814 GO:0008483|GO:0030170
Cmo16g00530 1595 SUPERFAMILY PLP-dependent transferases 593 1025 IPR015424 -
Cmo16g00530 1595 CDD OAT_like 1163 1576 IPR005814 GO:0008483|GO:0030170
Cmo16g00530 1595 PANTHER GAMMA AMINOBUTYRATE TRANSAMINASE 1, MITOCHONDRIAL 49 503 - -
Cmo16g00530 1595 SUPERFAMILY PLP-dependent transferases 70 494 IPR015424 -
Cmo16g00530 1595 CDD OAT_like 607 1024 IPR005814 GO:0008483|GO:0030170
Cmo16g00530 1595 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 301 338 IPR005814 GO:0008483|GO:0030170
Cmo16g00530 1595 SUPERFAMILY PLP-dependent transferases 1149 1195 IPR015424 -
Cmo16g00530 1595 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 1138 1196 - -
Cmo16g00530 1595 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 568 1034 - -
Cmo16g00530 1595 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 1224 1578 - -
Cmo16g00530 1595 Gene3D Aspartate Aminotransferase, domain 1 608 1024 IPR015422 GO:0003824
Cmo16g00530 1595 PANTHER GAMMA AMINOBUTYRATE TRANSAMINASE 1, MITOCHONDRIAL 1138 1196 - -
Cmo16g00530 1595 PANTHER GAMMA AMINOBUTYRATE TRANSAMINASE 1, MITOCHONDRIAL 568 1034 - -
Cmo16g00530 1595 PANTHER GAMMA AMINOBUTYRATE TRANSAMINASE 1, MITOCHONDRIAL 1224 1578 - -
Cmo16g00530 1595 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 1435 1472 IPR005814 GO:0008483|GO:0030170
Cmo16g00530 1595 Gene3D Aspartate Aminotransferase, domain 1 1139 1211 IPR015422 GO:0003824
Cmo16g00530 1595 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 49 503 - -
Cmo16g00530 1595 Coils Coil 486 506 - -
Cmo16g00530 1595 Coils Coil 1017 1037 - -
Cmo16g00530 1595 Pfam Aminotransferase class-III 85 492 IPR005814 GO:0008483|GO:0030170
Cmo16g00530 1595 Pfam Aminotransferase class-III 1225 1570 IPR005814 GO:0008483|GO:0030170
Cmo16g00530 1595 Pfam Aminotransferase class-III 607 1023 IPR005814 GO:0008483|GO:0030170
Cmo16g00530 1595 Gene3D Aspartate Aminotransferase, domain 1 86 493 IPR015422 GO:0003824
Cmo16g00530 1595 Gene3D - 117 393 IPR015421 GO:0003824
Cmo16g00530 1595 Gene3D - 1229 1527 IPR015421 GO:0003824
Cmo16g00530 1595 Gene3D - 642 924 IPR015421 GO:0003824
Cmo16g00530 1595 Gene3D Aspartate Aminotransferase, domain 1 1224 1579 IPR015422 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00530 K16871 POP2; 4-aminobutyrate---pyruvate transaminase [EC:2.6.1.96] - csv:101211530 844.343
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00408 Cmo-Chr11:2004045 Cmo16g00530 Cmo-Chr16:2567243 2.35E-08 dispersed
Cmo13g00552 Cmo-Chr13:6357951 Cmo16g00530 Cmo-Chr16:2567243 3.18E-28 dispersed
Cmo16g00530 Cmo-Chr16:2567243 Cmo16g00534 Cmo-Chr16:2591694 0 dispersed
Cmo16g00530 Cmo-Chr16:2567243 Cmo16g00532 Cmo-Chr16:2585050 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1054 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo16g00530 . . . . Cpe14g00413 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000985 1 3 1 1 1 2 1 4 1 3 2 3 3 5 5 6 3 3 4 3 3 2 2 2 3 4 2 3 3 2 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00530 Cmo_Chr16 FPKM 0.0 0.0 0.0 0.0 0.429111 1.361584 1.034045 0.0 0.0 0.0