Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00534 ATGTCCAACTTATACAGTACACAGGCTTCAGCACAAACAAAGGATTCAGGGTTTAAGGGGCATGATATGCTTGCACCTTTCACTACAGGATGGCAGTGCACAAATGAAAATCCACTAGTTATAGAAAGATCAGAGGGTTCATACGTATATGACACTAATGGAAGGAAGTACCTTGATTCTCTTGCTGGTCTATGGTGCACATCCTTAGGGGGAAATGAACCACGACTTGTGGCAGCTGCAACAAAACAACTAAATACCTTGCCATTTTACCACTCCTATTGGAATCGTACTACCAAGCCTGCATTGGATCTGGCAAAGGAACTGCTTGAAATGTTCACAGCTAGAAAAATGGGGAAAGTCTTTTTTACTAACAGTGGTTCAGAAGCCAATGATACTCAGGTCAAGCTGGTTTGGTATTATAACAATGCACTTGGAAGACCAAAAAAGAAAAAGTTCATTGCTCGCTCACATGCTTACCATGGTTCAACATTAGTAGCAGCCAGTCTTACTGGCCTAACAGATCTGCACCAGAAGTTTGACATTCCAGCTCCATTCGTCCTGCACACTGATTGTCCACACTACTGGCGTTACCATTTTCCAGGTGAAACAGAGGAAGAGTTCTCAACCAGATTAGCCAAAAACTTGGAGGAACTTATACTTAAGGAGGGGCCAGAGACGATTGCAGCGTTCATCGCTGAACCTGTCATGGGGGCTGGTGGTGCGATTCTTCCACCTACAACTTATTTTGAGAAGATCCAAGCTGTGCTCAAGAAGTATGATATACTTTTTATTGCAGATGAGGTAATCTGTGCCTTTGGAAGACTAGGGGCAATGTTTGGATGCGATAAATACAATATTAAACCAGACCTTGTATCTCTTGCAAAGGCACTTTCCTCGGCATATATGCCTATTGGAGCTGTTCTTGTGAGCCCTGAAATCTCTGATGTCATTCACTCTCAAAGCGACAAGCTAGGTTCCTTTTCTCATGGATTTACTTATTCCGGACACCCAACCGCGTGTGCTGTTGCACTTGAAACACTTAAGATCTACAAGGAAAGGAATATTGTGGAGCAAGTAAATCGCATCTCCTCGAGGTTTCAAGATGGCATAAAAGCTTTCTCTAATAGCCCTATCATTGGAGAGATAAGAGGGACTGGCTTGGTGTCAGGCACAGATTTTGTAGACAATAAATCACCAAATGATCCGTTCCCTCCAGAATGGGGAGTTGGTGCATATTTTGGAGCTGAATGTCGGAAAAATGGTTTGATATTACGTGCTGGAGAGAATACTATAACGATGGCTCCACCTTTTATCATCTCTCCTCAAGAAGTTGATGAGATAATCAGCATTTATGGAAAGGCACTAAAGGCTACAGAAGAGAGAGTGAAGGAATTGAAGGCTCAAAGGTAG 1410 42.84 MSNLYSTQASAQTKDSGFKGHDMLAPFTTGWQCTNENPLVIERSEGSYVYDTNGRKYLDSLAGLWCTSLGGNEPRLVAAATKQLNTLPFYHSYWNRTTKPALDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPKKKKFIARSHAYHGSTLVAASLTGLTDLHQKFDIPAPFVLHTDCPHYWRYHFPGETEEEFSTRLAKNLEELILKEGPETIAAFIAEPVMGAGGAILPPTTYFEKIQAVLKKYDILFIADEVICAFGRLGAMFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSDKLGSFSHGFTYSGHPTACAVALETLKIYKERNIVEQVNRISSRFQDGIKAFSNSPIIGEIRGTGLVSGTDFVDNKSPNDPFPPEWGVGAYFGAECRKNGLILRAGENTITMAPPFIISPQEVDEIISIYGKALKATEERVKELKAQR 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2591694 2595372 - CmoCh16G005340.1 Cmo16g00534 399569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00534 469 PANTHER GAMMA AMINOBUTYRATE TRANSAMINASE 1, MITOCHONDRIAL 12 465 - -
Cmo16g00534 469 Gene3D - 73 355 IPR015421 GO:0003824
Cmo16g00534 469 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 12 465 - -
Cmo16g00534 469 Pfam Aminotransferase class-III 38 454 IPR005814 GO:0008483|GO:0030170
Cmo16g00534 469 Gene3D Aspartate Aminotransferase, domain 1 39 455 IPR015422 GO:0003824
Cmo16g00534 469 SUPERFAMILY PLP-dependent transferases 32 457 IPR015424 -
Cmo16g00534 469 Coils Coil 448 468 - -
Cmo16g00534 469 CDD OAT_like 38 455 IPR005814 GO:0008483|GO:0030170
Cmo16g00534 469 PIRSF Transaminase_4ab_Lys_Orn 31 458 IPR005814 GO:0008483|GO:0030170
Cmo16g00534 469 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 263 300 IPR005814 GO:0008483|GO:0030170
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00534 K16871 POP2; 4-aminobutyrate---pyruvate transaminase [EC:2.6.1.96] - csv:101211530 853.588
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00659 Cmo16g00534 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01390 Cmo-Chr1:10955408 Cmo16g00534 Cmo-Chr16:2591694 0 dispersed
Cmo09g00702 Cmo-Chr9:3462122 Cmo16g00534 Cmo-Chr16:2591694 0 dispersed
Cmo16g00530 Cmo-Chr16:2567243 Cmo16g00534 Cmo-Chr16:2591694 0 dispersed
Cmo16g00534 Cmo-Chr16:2591694 Cmo17g00853 Cmo-Chr17:7886600 5.65E-44 dispersed
Cmo16g00532 Cmo-Chr16:2585050 Cmo16g00534 Cmo-Chr16:2591694 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1057 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g00659 Cmo16g00534 . . . . . Cpe01g00553 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000985 1 3 1 1 1 2 1 4 1 3 2 3 3 5 5 6 3 3 4 3 3 2 2 2 3 4 2 3 3 2 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00534 Cmo_Chr16 FPKM 75.122406 81.533195 97.610176 100.141396 29.450045 25.618156 30.388964 121.861237 120.862007 123.055626