Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00535 ATGGTGAGGAAACATGGATGGCAACTGCCTGCTCATACTTTTCAGGTCGTTGCAATCACAGTGTTTTGTTTACTGGTCGTGGCATTTTATGCTTTCTTTGCTCCCTTCCTCGGTGGCCATGTCTGGGAGTACATATTGGTTGGCGTTTATTCACCAGTGGCTCTCCTTGTGTTCACTCTTTATGTGAGATGCACTGCAATTAATCCAGCTGACCCTGGTATTATGTCTAAATTTGATAATCGGGTTACAAACCCCAACAATAATCAAGGGTTATCACTGAAGGGTCTACCACAAAATTTAGATGAAATTGTCAATGGCAGACATTCGTCTGCATCATCACCTTCCAGAAGTTCCATATCAGGGGCTAATACGAGTAGGAAAGGTTCGGTAGGAGAAGTTGGCGGAGCAGACAAACCAGTGGAACAACCAACAGTTCGCAGTGCTGATAAAATTGGACTAATTTGTTGCGCATTATTTGTACACGAAGATTGTCGAAAAAGGGATGGAGGGGCAGACCCTCAAAGTGCTGCCGAGGATGCTTTATTTTGCACATTGTGCAATGCTGAGGTGCGGAAGTTCAGCAAACATTGTAGAAGTTGTGATAAATGTGTTGATGGTTTTGATCACCATTGCCGGTGGCTCAATAACTGTGTGGGGCAGAAAAACTATATCACATTTATCTCTCTTATGGCAGTAAGTCTTGTTTGGCTCGTTGTTGAAGCTGGAATTGGTATTGCTGTTTTAGTGCGTTGCTTCGTTAATAAAAGAGGCATGGAAACTGAAATTATCGATCGACTTGGAAATGGCTTTTCTCGTGCCCCGTTTGCGACAGTTGTGGCGATATGTACTGCAGTTTCCATGCTGGCCTGTATCCCTTTGGGCGAACTTTTCTTTTTCCACATGATATTAATTAAAAAGGGTATTACAACCTATGAATATGTCATAGCGATGAGGGCTACAAGTGAGGCCCCTGCTGGAGCTTCTGTTGACGAGGAATTGCCAAACATTATGTACTCTCCATCAGGATCTGCTACCACTGGTTTGAGTGGTGGAAGTTCTCTTGGTTTACAATACAAGGGGGCATGGTGTACGCCTCCAAGAGTTTTTGTTGATTATCAGGATGAAGTGGTGCCTCACTTGGAGCCAGGAATGGTCCCATCTACTGTTGACCCAGATGCAGCAGGAGCTTCAGAAAGAGGGCCAAAAGCACCCAAAAGAGCCGTTCGTCTTAGTGCTTGGAAACTTGCAAAACTGGATTCTAATGAGGCCATGAAGGCTGCTGCCAAAGCTAGAGCATCATCATCTGTTCTGAGGCCTCTTGATAACCGCCGTTTCCCAGATACGGAATTGAGCTCCAGCGGAAACCTAAGTGTTAGAAGTAGTGTGAGCACTGACACTGGTGCAAACAAAGAGATTAAAAATGATCTTAGGCTCTCTCCCATAAGAAATTCCTTGGCTCCGAGTCAAGCTAGTCAGGATGATTATGAAACTGGAACACAGAGCATGAGTAGCTTCAGTAGTCCAAGCCATGTGCATGAAACAGTCACCCTCAGTCCTCTCCCACATGGTAATGGTCTGGGTCTGGGTCGTTTTAGTGCTGCTTCATCAATTCCCAGCCTATTTCCTGAACGCCCATATTCTTCCAAGCCATCCTACCCTGTTGTCACTGACCCAAGATCTCATACTTCTGGGTTTGACGATAAGGTTGCTCAGAGGGGAAACACTACTGATCCATTATTGCTTTCAGCCCCTACTTCTCTTCTCAGAGATGTCAGGAAGACATCTGTTGTCTGGGACCAAGAAGCTGGGAGGTATGTCTCAGTTCCTGTTTCAGCTTCAGAAGCCCGTCCTTCTAGATCGTCTGTGCAGATAGGTTTGCCGAATTTAAATGGCGAAACAAGCAACAACACTAGAAAGCCAGTTAATCCATTGCAACCTGCATCATCTTCCAACACAAAAGCTCCATTGCAGCAAGCAGAGAAGTTAATGTACACAGGAGATTCCATTTTCTTCGGTGGTCCTCTACTGAACATCTCTTCTCGAGATAGTCTGAGAAACGAAAGGGTCTCGACTTCGAGAGAAAGCCAAGACAGAATGACGATTACTCTATCCCGTGAGTCCAGATTCAAAAGGGACTCGGCTTCAAACCAACTCCCTGTTTTTGTCCCTGGTGGTTATGAGCAAAGCCGACCATCCGGTTCTCGTTTAAGCAAGTTGGAAAAAGAAGCCAAAAGGACGGAATCAATTCTTGGCTCCGAAATCTTGCAACCTGACATTGTTTGCAAGCTCAATTGGTCGGTACATGTGAGAGTTTCAGTCGATGAATTCTGGAAGGAGCTGAGGATTTTTGGAACAGCGGAGTTGAAAGATGGTTGA 2376 45.2 MVRKHGWQLPAHTFQVVAITVFCLLVVAFYAFFAPFLGGHVWEYILVGVYSPVALLVFTLYVRCTAINPADPGIMSKFDNRVTNPNNNQGLSLKGLPQNLDEIVNGRHSSASSPSRSSISGANTSRKGSVGEVGGADKPVEQPTVRSADKIGLICCALFVHEDCRKRDGGADPQSAAEDALFCTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGQKNYITFISLMAVSLVWLVVEAGIGIAVLVRCFVNKRGMETEIIDRLGNGFSRAPFATVVAICTAVSMLACIPLGELFFFHMILIKKGITTYEYVIAMRATSEAPAGASVDEELPNIMYSPSGSATTGLSGGSSLGLQYKGAWCTPPRVFVDYQDEVVPHLEPGMVPSTVDPDAAGASERGPKAPKRAVRLSAWKLAKLDSNEAMKAAAKARASSSVLRPLDNRRFPDTELSSSGNLSVRSSVSTDTGANKEIKNDLRLSPIRNSLAPSQASQDDYETGTQSMSSFSSPSHVHETVTLSPLPHGNGLGLGRFSAASSIPSLFPERPYSSKPSYPVVTDPRSHTSGFDDKVAQRGNTTDPLLLSAPTSLLRDVRKTSVVWDQEAGRYVSVPVSASEARPSRSSVQIGLPNLNGETSNNTRKPVNPLQPASSSNTKAPLQQAEKLMYTGDSIFFGGPLLNISSRDSLRNERVSTSRESQDRMTITLSRESRFKRDSASNQLPVFVPGGYEQSRPSGSRLSKLEKEAKRTESILGSEILQPDIVCKLNWSVHVRVSVDEFWKELRIFGTAELKDG 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2598924 2605912 - CmoCh16G005350.1 Cmo16g00535 399570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00535 791 MobiDBLite consensus disorder prediction 613 655 - -
Cmo16g00535 791 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 9 538 - -
Cmo16g00535 791 MobiDBLite consensus disorder prediction 381 406 - -
Cmo16g00535 791 ProSiteProfiles DHHC domain profile. 181 231 - -
Cmo16g00535 791 MobiDBLite consensus disorder prediction 106 141 - -
Cmo16g00535 791 MobiDBLite consensus disorder prediction 542 578 - -
Cmo16g00535 791 MobiDBLite consensus disorder prediction 481 509 - -
Cmo16g00535 791 PANTHER PROTEIN S-ACYLTRANSFERASE 19-RELATED 9 538 - -
Cmo16g00535 791 MobiDBLite consensus disorder prediction 612 655 - -
Cmo16g00535 791 Pfam DHHC palmitoyltransferase 180 315 IPR001594 GO:0016409
Cmo16g00535 791 Coils Coil 789 791 - -
Cmo16g00535 791 MobiDBLite consensus disorder prediction 106 127 - -
Cmo16g00535 791 MobiDBLite consensus disorder prediction 446 469 - -
Cmo16g00535 791 MobiDBLite consensus disorder prediction 442 509 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00535 K20027 ZDHHC1_11; palmitoyltransferase ZDHHC1/11 [EC:2.3.1.225] - csv:101211028 1327.0
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00658 Cmo16g00535 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01765 Cmo-Chr4:8903567 Cmo16g00535 Cmo-Chr16:2598924 1.11E-100 dispersed
Cmo04g01971 Cmo-Chr4:10101014 Cmo16g00535 Cmo-Chr16:2598924 5.27E-46 dispersed
Cmo16g00535 Cmo-Chr16:2598924 Cmo18g00660 Cmo-Chr18:8373183 9.00E-68 dispersed
Cmo16g00535 Cmo-Chr16:2598924 Cmo04g00658 Cmo-Chr4:3255391 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1058 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g00658 Cmo16g00535 . . . . Cpe14g00415 Cpe01g00552 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005383 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00535 Cmo_Chr16 FPKM 15.015544 14.963758 10.659508 10.277367 7.55158 8.072051 8.71807 1.908751 2.394213 1.484047