Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00537 ATGGATATAGATCTTAGGTTACCTTCTGGTGAGCACGACAAAGATGAAGAACCGAATGGAATTAATAATATGTTGGATGTGGAAGAAAAACTTCATAATGGAGTTATTGAGAGTGGAAATAATATGGTTGATGCTACAGATGGGATGCACGTTGAAGATGGTGGAGATTTAAATTCCCCCATGTTAGACATGGTAATGTTTAAAGAGGACACGAATCTGGAACCACTTCCTGGCATGGAATTTGAATCACACAGTGAAGCATATTCCTTCTATCAGGAATATGCTCGTTCTATGGGATTCAACACAGCAATACAAAATAGCCGCCGTTCAAAGACATCAAGGGAATTTATTGATGCAAAATTTGCATGTTCACGTTATGGCATGAAGAGAGAGTATGATAAGTCCTTCAATCGTCCACGTGTAAGGCAAACTAAGCAAGAAAGTGAAAATTCAACTGGTCGAAGAGCATGTGCAAAGACAGACTGCAAAGCTAGCATGCACGTAAAGAGGAGGGCGGATGGTAAATGGGTTATACATAGTTTTGTTAAGGAGCATAACCATGAGCTTTTACCAGCTCAAGCTGTCAGTGAACAAACAAGAAAGATGTATGCTGCAATGGCTAGGCAATTTGCTGAATACAAAAATGTTGTAGGACTCAAGAATGACTCGAAGAATCCATTTGACAAAGTTCGCAATTTTGCTTTTGATGCTGGAGATGCAAGGATTTTACTCGACTTTCTTACTCAGATGCAGAATTTGAACTCTAACTTCTTTTATGCTGTCGATATTGGAGAAGACCACCGACTAAGGAATTTATTTTGGATCGATGCAAAAAGTAGGCATGATTATATTTATTTTAATGATGTAGTTTCTCTTGATACTACCTACATCAGAAATAAATATAAGTTGCCCCTTGCTTTCTTTGTTGGGGTGAATCAACATTATCAATTTATGTTGCTTGGATGTGCTTTGCTATCAGATGAAAGTCCAACAACATATGCTTGGCTATTGCACGTGTGGTTGAAAGCAATCGGTGGACAGGCTCCAAAAGTTATTATCACTGACCATGATAAGGTACTGAAATCAGTCATTCAAGAGGTGCTTCCAAATGTGTATCATCACTTCACTCTGTGGCACATATTAGCGAAAATTTCTGAAAACCTTGGCAATGTAACAAAACGGCACGAAAATTTTATGGCGAAATTTGAAAAATGCATCTATAGATCATGGACAACTGAAGAGTTTGAGAAAAGGTGGTGGAAACTGGTTGATAGATTTGAACTCAGAGAAGATGAATTGGTTCAGTCCTTATGTGAAGATCAAAGACAATGGGCACCAACATATATGAAAGATGTCTTTTTGGCTGGAATGTCCGTGGCACAGCGATCTGAAAGTGTAAACTCCTTCCTTGACAAGTATTTGCACAAGAAGACCACTGTGCAAGAGTTTGTGAAACAGTATGAATCAATTTTACAGGATAGGTATGAAGAGGAAGCAAAAGCTGATTCTGATACATGGAACAAACAACCCACTTTAAGATCTCCTTCACCGTTTGAGAAGAGTATTTCGGGAATGTACACACATGCGGTATTTAAAAAATTTCAAGTCGAGGTCTTAGGTGCTGTTGCTTGCTTTCCTAGGAAAGAAAAGGAAGATGAGAAAAGCATTACATATCATGTTCAAGATTTTGAAAAGAATCTAGTCTTCATTGTTGTATGGAATGGATTGAAGTCGGAAGTTTCTTGTCTGTGCCGGTTGTATGAATATAAAGGTTACCTTTGTAGACACGCTATGGTTGTTCTTCAAAAGTGTGAACTTTCTACTATTCCAACTCAATATATTTTAAAGCGGTGGACAAGAGATGCTAAGAGCAGACATTTATTGGGAGAAGAACCTGAGCTAGTACAGTCTCGGGTGCAACGGTACAATGATCTATGCCAGCGAGCATTGAGATTGATTGAAGAGGGATCTTTGTCCCAAGAGAGTTACAGTGTTGCAGCACATGCACTTGATGAAACTCTTGGAAATTGTATTGGTGTCAATAATTCTAATAGAACCTTTTTAGAAGCCGGTCCATCGGCAGCTCATAGTCTACTCTGCATCGAAGAAGATAGTCAGATTAGAAACATAGGCAAGACAAACAAGAAAAAGAATCCAACTAAGAAAAGGAAGGTGAATTCTGAACCTGATGTCATGACTGTTGGAGCACATGATAACTTGCAGCACATGGACAAATTAAGCTCAAGAGCTGTAACCCTTGATGGCTATTTTGGCGCACAGCCAAGCGTGCAAGGAATGGTACAACTGAACTTAATGGCACCGACCCGTGATAATTACTATGGAAATCAACAGGCCATCCAGGGGCTGGGGCAATTAAACTCCATAGCACCTAGCCATGATGGTTATTACCCAGCTCAACCGAGCATTCATGGACTGGGACAAATGGATTTCTTCCGAGCACCAGCTGGTTTCGCCTACGGCATTCGGGTCCAAGAAGCCAAAGGCTTTATGGAAATGGTTGCTATAGCATACTCTGATATAGTGTTTTTTTCAGGGAGAAATAGGAAGAAAAAGAACGATTTTGTTTATCCTACGTGGTCGCGTTCGAGTGACATCGTTTGTCCTTATGGAGCTGAATTCGACTTGAAACTGAGTTTTTGTGTGGTAAGTGATGCCATCGTTTGTCCTTACGGAGCTGAATCCGACTTGAAACTGAGTTTTTGTATGGTAAGTCAAGCCATCATTTGTCCTTATGGAGCTAAATCCGACTTGAAACTGACTTTTTGCGGGGTAAGTCAAGCCATCGTTGTCCTTATGGGTTTAAGTGGCATCGTTTGTCCTTACGGAGCTGAATCCGACTTGAAACTGACTTTTTACGTGGAAAATGAAAGAGTCTTATCCAGGAGAAGGGAGCAGATTAGAGATGGTGGAATTATTAGTTTACCAAAGAAGGACACCCTTTTTGAAGAGGATATAGACTTTGAGCCGCACAATGGCATTGAATTTGAGTCCCATGAAGCTGCATACACATTTTATCAAGAATATGCCAAATCAATGGGATTCACCACATCGATTAAGAATAGTCGACGTTCAAAGAAATCAAAGGAGTTTATCGATGCAAAATTTGCGTGTTCAAGATATGGAGTTACTCCTGAATCTGAGAGCGGAAATAGTCGAAGGCCCAGCGTGAAGAAGACCGATTGTAAAGCCAGCATGCATGTGAAGAGAAGGCCAGATGGAAGATGGATTATTCACGAGTTCATAAAAGATCATAATCACGAGCTTTTACCTGCTCTTGCGTATCATTTTCGTATCCATAGGAATGTAAAGCTGGCAGAGAAGAATAACATCGACATATTGCATGCTGTTAGTGAAAGAACACGGAGGATGTATGTCGAGATGTCGAAAAAATGTGGCGGGTATAGAAATTTCAGTTTTCCGCAGATTAACACGAGTTATCAGTTTGACAAAGGCCGGTATTTAGCTCTTGATGAGGGGGATGCCCAAATATTGCTCGAATACTTCAAACGTATCCAAAAGGAGAATCCCGACTTTTTCTATGCTATAGACTTAAATGAAGAGCAGCGTCTGAGAAACTTGTTATGGGTCGATGCCAAAAGTAGAAGCGATTATGTTAGTTTCACTGATGTCGTTTCATTCGATATCTCATACATTAAAACCAATGATAAGCTTCCGTTTGCTCCGTTCATTGGGGCGAACCATCATGCGCAGTCAATGATACTTGGTTGTGCACTGGCTGCAGATTGGACTAAGCCAACATTTACCTGGTTGTTGAAGACATGGCTTAGAGCAATGGGTGGGAAAGCTCCCAAAGTTATTATATCTGATCAAGACAAGGCCTTGAAGTTAGCCATTGAAGAAGTCTTCCCAAATACCCGCCATTGCTTTGCGCTTTGGCATATATTGGAAAAGATTCCTGAAACTCTTGCTCACGTCATCAAACGAAACGAAAACTTCTTGGCAAAGTTTAATAAGTGCATTTTCAAGTCGTGGTCAGACGAGCAGTTCGATATGCGATGGTGGAAGATGGTTACTAGATTTGAACTTCAAGACGATGAATGGATTCAATCATTGTATGACGATCGTAAAAAATGGGTACCGACTTATATGGAGGATATCTTCTTGGCTGGAATGTCAACCGCCCAACGTTCCGATAGTATGAATGCTTTCTTTGACAAATACATTCACAAGAAAATCACTCTGAAAGAGTTCTTGAAACAATATGGTATCATTCTGCAAAATCGGTACGAAGAAGAAGCAATAGCGGATTTCGATACATTGCATAAACAGCCCGCCTTAAAATCTCCTTCTCCCTGGGAGAAACAAATGTCTACAGTTTACACACACACAATATTTAAGAAGTTCCAAGTTGAAGTTCTCGGGGTAGTTGGCTGTCGTATGAGAAAAGAAATCGACGATGGAGCGATTACTACATTCAGAGTTCAGGACTGTGAGAAAGATGAGCATTTTCTAGTAAGGTGGCATAAATTGAACTCTGAAGTTTCTTGTTTTTGCCGTTTGTTTGAATATAAAGGTTTTCTTTGTCGACACGCATTGATCGTGTTACAAATGCTCGATTTTCGGAGTATCCCGCCTCAATACATTTTAAAGAGGTGGACAAAAGATGCTAAGAGTAGGCAACCAATTGCTGAAGGAACAGAATTTAGACAGAACAGAGCACAACGTTACAACGATTTATGTAAAAAGGCAATTGAATTGAGCGAAGAAGGATCACATTCCGAGGAGTGTTATAATATAGCGGTTCGTACATTGGTCGAAGCTCTAAAGAACTGTGTTAATATTAACAACTCAAAAAGTGCTCCAGCTGAATCTAGCGTTCACGCGCATGGTCTACGTGAGGAGGACGAGAATCAGGGAAGTATAACTGCTAAAACAAATAAGAAGAAGAGTGTAAACAGAAAACGAAAGGTACAATCTGAAGCAGCTATGATACTCGTCGAACCACAGGACAACTTGCAGCAAATGGTCGAATCTCCCTACTACGATAGTTTAACCTCGGATAGCATGACCCTGAGCGGATATTACGGAACCCAACAGAACGTTCAAGGATTGGTACAGCTGAACTTGATGGAGCCTCCCCATGACGCATCGTACTACGTCGATCAACAAAGCATTCAAGGGCTGGGACAGTTAAACACAATTGCAGCCAATCATGATGGGTATTTTGGGGCGCAGCATAGTAGCATTCATGCACTGGTGGATTATCGACCGGCTACGAGTTATAACTATAGCTTACAGGACGAGCAACATTTGAGATCTGCACAGCTTCATGGCAGTAGTTCTAGACATACTTAA 5337 40.58 MDIDLRLPSGEHDKDEEPNGINNMLDVEEKLHNGVIESGNNMVDATDGMHVEDGGDLNSPMLDMVMFKEDTNLEPLPGMEFESHSEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGMKREYDKSFNRPRVRQTKQESENSTGRRACAKTDCKASMHVKRRADGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMARQFAEYKNVVGLKNDSKNPFDKVRNFAFDAGDARILLDFLTQMQNLNSNFFYAVDIGEDHRLRNLFWIDAKSRHDYIYFNDVVSLDTTYIRNKYKLPLAFFVGVNQHYQFMLLGCALLSDESPTTYAWLLHVWLKAIGGQAPKVIITDHDKVLKSVIQEVLPNVYHHFTLWHILAKISENLGNVTKRHENFMAKFEKCIYRSWTTEEFEKRWWKLVDRFELREDELVQSLCEDQRQWAPTYMKDVFLAGMSVAQRSESVNSFLDKYLHKKTTVQEFVKQYESILQDRYEEEAKADSDTWNKQPTLRSPSPFEKSISGMYTHAVFKKFQVEVLGAVACFPRKEKEDEKSITYHVQDFEKNLVFIVVWNGLKSEVSCLCRLYEYKGYLCRHAMVVLQKCELSTIPTQYILKRWTRDAKSRHLLGEEPELVQSRVQRYNDLCQRALRLIEEGSLSQESYSVAAHALDETLGNCIGVNNSNRTFLEAGPSAAHSLLCIEEDSQIRNIGKTNKKKNPTKKRKVNSEPDVMTVGAHDNLQHMDKLSSRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYPAQPSIHGLGQMDFFRAPAGFAYGIRVQEAKGFMEMVAIAYSDIVFFSGRNRKKKNDFVYPTWSRSSDIVCPYGAEFDLKLSFCVVSDAIVCPYGAESDLKLSFCMVSQAIICPYGAKSDLKLTFCGVSQAIVVLMGLSGIVCPYGAESDLKLTFYVENERVLSRRREQIRDGGIISLPKKDTLFEEDIDFEPHNGIEFESHEAAYTFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESESGNSRRPSVKKTDCKASMHVKRRPDGRWIIHEFIKDHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRRMYVEMSKKCGGYRNFSFPQINTSYQFDKGRYLALDEGDAQILLEYFKRIQKENPDFFYAIDLNEEQRLRNLLWVDAKSRSDYVSFTDVVSFDISYIKTNDKLPFAPFIGANHHAQSMILGCALAADWTKPTFTWLLKTWLRAMGGKAPKVIISDQDKALKLAIEEVFPNTRHCFALWHILEKIPETLAHVIKRNENFLAKFNKCIFKSWSDEQFDMRWWKMVTRFELQDDEWIQSLYDDRKKWVPTYMEDIFLAGMSTAQRSDSMNAFFDKYIHKKITLKEFLKQYGIILQNRYEEEAIADFDTLHKQPALKSPSPWEKQMSTVYTHTIFKKFQVEVLGVVGCRMRKEIDDGAITTFRVQDCEKDEHFLVRWHKLNSEVSCFCRLFEYKGFLCRHALIVLQMLDFRSIPPQYILKRWTKDAKSRQPIAEGTEFRQNRAQRYNDLCKKAIELSEEGSHSEECYNIAVRTLVEALKNCVNINNSKSAPAESSVHAHGLREEDENQGSITAKTNKKKSVNRKRKVQSEAAMILVEPQDNLQQMVESPYYDSLTSDSMTLSGYYGTQQNVQGLVQLNLMEPPHDASYYVDQQSIQGLGQLNTIAANHDGYFGAQHSSIHALVDYRPATSYNYSLQDEQHLRSAQLHGSSSRHT 1778
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2608907 2619221 + CmoCh16G005370.1 Cmo16g00537 399572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00537 1778 Pfam SWIM zinc finger 1506 1532 IPR007527 GO:0008270
Cmo16g00537 1778 Pfam SWIM zinc finger 573 604 IPR007527 GO:0008270
Cmo16g00537 1778 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 52 784 IPR031052 GO:0006355
Cmo16g00537 1778 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 960 1690 IPR031052 GO:0006355
Cmo16g00537 1778 MobiDBLite consensus disorder prediction 1 20 - -
Cmo16g00537 1778 MobiDBLite consensus disorder prediction 1616 1648 - -
Cmo16g00537 1778 Pfam MULE transposase domain 1217 1310 IPR018289 -
Cmo16g00537 1778 Pfam MULE transposase domain 289 382 IPR018289 -
Cmo16g00537 1778 SMART 26again6 1508 1535 IPR006564 GO:0008270
Cmo16g00537 1778 SMART 26again6 580 607 IPR006564 GO:0008270
Cmo16g00537 1778 Pfam FAR1 DNA-binding domain 1010 1097 IPR004330 -
Cmo16g00537 1778 Pfam FAR1 DNA-binding domain 89 191 IPR004330 -
Cmo16g00537 1778 ProSiteProfiles Zinc finger SWIM-type profile. 569 605 IPR007527 GO:0008270
Cmo16g00537 1778 MobiDBLite consensus disorder prediction 1621 1636 - -
Cmo16g00537 1778 ProSiteProfiles Zinc finger SWIM-type profile. 1497 1533 IPR007527 GO:0008270
Cmo16g00537 1778 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 52 784 - -
Cmo16g00537 1778 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 960 1690 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00537 - - - bhj:120074852 1594.71
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00653 Cmo16g00537 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01565 Cmo-Chr1:12038282 Cmo16g00537 Cmo-Chr16:2608907 8.21E-114 dispersed
Cmo04g00654 Cmo-Chr4:3244730 Cmo16g00537 Cmo-Chr16:2608907 2.41E-79 dispersed
Cmo04g00656 Cmo-Chr4:3247498 Cmo16g00537 Cmo-Chr16:2608907 0 dispersed
Cmo11g01806 Cmo-Chr11:12670409 Cmo16g00537 Cmo-Chr16:2608907 1.76E-148 dispersed
Cmo16g00537 Cmo-Chr16:2608907 Cmo19g00838 Cmo-Chr19:8202638 5.11E-145 dispersed
Cmo17g00840 Cmo-Chr17:7824503 Cmo16g00537 Cmo-Chr16:2608907 2.83E-120 dispersed
Cmo20g00702 Cmo-Chr20:3464698 Cmo16g00537 Cmo-Chr16:2608907 1.63E-101 dispersed
Cmo01g01391 Cmo-Chr1:10965207 Cmo16g00537 Cmo-Chr16:2608907 0 transposed
Cmo07g00013 Cmo-Chr7:78674 Cmo16g00537 Cmo-Chr16:2608907 0 transposed
Cmo13g00877 Cmo-Chr13:7958155 Cmo16g00537 Cmo-Chr16:2608907 0 transposed
Cmo16g00537 Cmo-Chr16:2608907 Cmo04g00653 Cmo-Chr4:3242262 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1061 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g00653 Cmo16g00537 . . . . Cpe14g00417 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11273 PF03101 FAR1 5.10E-27 CL0274 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00537 Cmo_Chr16 FPKM 1.311111 1.102408 1.405591 2.247829 1.18239 1.327957 1.513886 2.841567 2.119975 3.163235