Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00538 ATGACTCATAATAACCTCCTCATTAACATTGCCCTCTCTTCTCTCGTTCCTCTTTTTCTCGCTTTGCTCCTCGTCGTCATTCCTACCCCTCCTTTCTTCTCCGTTCCCGATGACTCCCTTAGCTGCCACCACCACCACCATAAACCCTCGGCTGATGAAGAAGACCGAGCGAGTATCGGTTCCATTTGTGACACCTTCCCGACTGCCCTTCTCCCACCAGAAACTGTCAACACTTCTGTCTTATGCGTTGACCAAAATGGATGCTGCAACTTCACTACTGTACAGGCAGCTGTGGATGCTGTGTTGAATATGAGCTCCAAAAGAAGCTTAATATGGATCAACACTGGAATCTATTTTGAGAAGGTGATGGTTCCGAGATCGAAACCGAACGTGACATTTCAAGGACAAGGCTACACAACCACGGCTATTGTTTGGAACGACACTGCTAATTCTTCGCATGGCACCTTTTACAGCGGCTCCGTCCAAGTCTTCTCTTCCAATTTTATTGCCAAGAATATAAGCTTCATGAATGTGGCGCCAATTCCAGGGCCGGGCGTCATCGGAGCACAGGCGGTGGCGATTCGGATCGGCGGAGACCAGGCGGCGTTTTGGAACTGCGGATTCTTCGGCGCTCAAGACACGCTCCACGATGACCGCGGCCGCCATTACTTCAAGGATTGCTACATCCAAGGCTCCATCGATTTCATCTTCGGAAATGGAAGATCTTACTACGAGAGTTGCCAGATGATTTCGATGGCGAATCCAGTTCCGCAAGGATCAAAGTTCGTGAACGGAGCCGTGACAGCGCACGGCAGAGCCTCCGCAGACGAGAACTCTGGATTTGCTTTTGTTAATTGCAGCATCGGTGGAACCGGCCGAGTGTGGCTCGGTCGCGCGTGGCGGCCGTTCTCTCGCGTCGTCTTTGCTAACACCGTCATGACGGATATTATTGCGTCGGAGGGATGGAATGACTTTAATGACCCCGCAAGGGACCAGACGATATTCTACGGGGAGTACAACTGCAGTGGAGCAGGAGCCAACATGAGCGCAAGGGCTCCCTATGTTCAGAGGCTCAATGATACTCAAGTTTCCCCTTTCCTCAACCTCTCCTTCATTGACGCAGACCAATGGCTGCAACCCTATTAA 1146 51.22 MTHNNLLINIALSSLVPLFLALLLVVIPTPPFFSVPDDSLSCHHHHHKPSADEEDRASIGSICDTFPTALLPPETVNTSVLCVDQNGCCNFTTVQAAVDAVLNMSSKRSLIWINTGIYFEKVMVPRSKPNVTFQGQGYTTTAIVWNDTANSSHGTFYSGSVQVFSSNFIAKNISFMNVAPIPGPGVIGAQAVAIRIGGDQAAFWNCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNGRSYYESCQMISMANPVPQGSKFVNGAVTAHGRASADENSGFAFVNCSIGGTGRVWLGRAWRPFSRVVFANTVMTDIIASEGWNDFNDPARDQTIFYGEYNCSGAGANMSARAPYVQRLNDTQVSPFLNLSFIDADQWLQPY 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2628087 2630329 + CmoCh16G005380.1 Cmo16g00538 399573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00538 381 PANTHER PECTINESTERASE 8-RELATED 41 381 - -
Cmo16g00538 381 ProSitePatterns Pectinesterase signature 2. 229 238 IPR033131 -
Cmo16g00538 381 SUPERFAMILY Pectin lyase-like 79 380 IPR011050 -
Cmo16g00538 381 Pfam Pectinesterase 82 374 IPR000070 GO:0030599|GO:0042545
Cmo16g00538 381 Gene3D - 79 381 IPR012334 -
Cmo16g00538 381 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 41 381 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00538 Cmo-Chr16:2628087 Cmo20g00147 Cmo-Chr20:720335 2.06E-84 dispersed
Cmo16g00538 Cmo-Chr16:2628087 Cmo14g00235 Cmo-Chr14:1081221 1.69E-129 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00538 - - bhj:120090174 673.7