Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00542 ATGGAGAAGGAAATCTTCGTTGGTGGGATCTTCAATTCTTCGTCCTTCTCTTCAATCCTTAAAGCTATGCCGTCCACCGCCATTTTCTCTCCTTCCTGTTCATCCTCCGCCCCTTTTACTCCCTTCGCTTTTTCACCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAAGGCGTTTTTAGCTGTTACTACGCGCAAGCCATTTGGTTCCCATTTTGCTAATTTGAAGAAGAAATCTCTGTTCTCCAGGAAGAATTTCACCATGGCTGTTTCAATCGAGAAGGAAACCCCCATCGCCGTCCGTCCCGATACGTTCCTTACGGAATACGATGAGGCCACGGGAGGCATCTCTTCCGGCTCCTCGTCGATTAGGGCTCGCTTCGAGAAGATGATTAGGGATGCTCAGGATAGTGTTTGCAAGGCCATTGAGGAAGCGGATGGAGGGGGGAAGTTTAAGGAGGATGTTTGGTCTAGACCTGGTGGTGGCGGCGGTATCAGTAGGGTTCTTCAGGATGGTGCTGTGTGGGAGAAGGCTGGCGTTAATGTCTCGGTTGTGTATGGAGTTATGCCTCCTGATGCTTACAGAGCTGCCAAAGCTGCTGCTGGGGATCACAAGCCTGGGCCTATTCCTTTCTTTGCCGCTGGCATTAGCTCAGTTTTACATCCTAAGAACCCATTTGCACCAACTTTGCATTTCAACTACAGATATTTCGAGACTGATGCTCCTAAAGATGTTCCTGGTGCACCAAGGCAATGGTGGTTTGGTGGTGGGACTGATTTAACTCCTTCTTACATCTTTGAGGAAGATGTCAAGCATTTCCATTCGGTAAATAACTTCTCTTTCATCCTTCAAGTGTTAAGAGATATCTCTTATGTAGTTGTGCATCATAATGGTCCTTACGAATGTCGGTACAAAAAAGTGCTTGTGACAAATTTGATCCATCCTTCTATCCTCGATTCAAAAAATGGTGTGATGACTACTTCTACATCAAGGTATTTCATCATTCTTATACTTTTGTTCATGTTTACTATAGCGAACGATGCAACTTCTTTTAAGAAACCAGGACATTCTATCTATAGCTATGGGATTGAAGTTATAATTTTATTGCAGCACCGAGGCGAAAGACGAGGACTTGGAGGAATATTTTTTGATGATTTAAACGACTACGATCAGGAGATGCTTCTATCATTTGCCACCGAGTGTGCCAATTCTGTGGTTTCTGCCTACATACCCATCATAGAGAGAAGAAAGGATACCCCATTTACTGAACAGAACAAAGCATGGCAACAACTGCGCAGGGGCCGCTATGTCGAATTCAACTTGGTTTACGATCGAGGTACTACATTTGGACTGAAAACAGGAGGTCGGATTGAAAGTATTTTGGTTTCTCTTCCTCTAACAGCTAGATGGGAATATGACCATAAACCAGAAGAGGGAAGTGAAGAATGGAAATTACTGGATGCATGCATCAACCCCAAAGAATGGATCTAA 1488 44.22 MEKEIFVGGIFNSSSFSSILKAMPSTAIFSPSCSSSAPFTPFAFSPSSSSSSSSSKAFLAVTTRKPFGSHFANLKKKSLFSRKNFTMAVSIEKETPIAVRPDTFLTEYDEATGGISSGSSSIRARFEKMIRDAQDSVCKAIEEADGGGKFKEDVWSRPGGGGGISRVLQDGAVWEKAGVNVSVVYGVMPPDAYRAAKAAAGDHKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDVPGAPRQWWFGGGTDLTPSYIFEEDVKHFHSVNNFSFILQVLRDISYVVVHHNGPYECRYKKVLVTNLIHPSILDSKNGVMTTSTSRYFIILILLFMFTIANDATSFKKPGHSIYSYGIEVIILLQHRGERRGLGGIFFDDLNDYDQEMLLSFATECANSVVSAYIPIIERRKDTPFTEQNKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHKPEEGSEEWKLLDACINPKEWI 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2633087 2635880 - CmoCh16G005420.1 Cmo16g00542 399577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00542 495 Gene3D Coproporphyrinogen III oxidase, aerobic 348 495 IPR036406 GO:0004109|GO:0006779
Cmo16g00542 495 PRINTS Coprogen oxidase signature 212 236 IPR001260 GO:0004109|GO:0006779
Cmo16g00542 495 PRINTS Coprogen oxidase signature 165 186 IPR001260 GO:0004109|GO:0006779
Cmo16g00542 495 PRINTS Coprogen oxidase signature 251 273 IPR001260 GO:0004109|GO:0006779
Cmo16g00542 495 PRINTS Coprogen oxidase signature 148 164 IPR001260 GO:0004109|GO:0006779
Cmo16g00542 495 PANTHER COPROPORPHYRINOGEN III OXIDASE, MITOCHONDRIAL 81 276 IPR001260 GO:0004109|GO:0006779
Cmo16g00542 495 PANTHER COPROPORPHYRINOGEN III OXIDASE, MITOCHONDRIAL 365 495 IPR001260 GO:0004109|GO:0006779
Cmo16g00542 495 SUPERFAMILY Coproporphyrinogen III oxidase 366 495 IPR036406 GO:0004109|GO:0006779
Cmo16g00542 495 SUPERFAMILY Coproporphyrinogen III oxidase 120 276 IPR036406 GO:0004109|GO:0006779
Cmo16g00542 495 PANTHER BNAA09G50920D PROTEIN 81 276 - -
Cmo16g00542 495 PANTHER BNAA09G50920D PROTEIN 365 495 - -
Cmo16g00542 495 Pfam Coproporphyrinogen III oxidase 367 494 IPR001260 GO:0004109|GO:0006779
Cmo16g00542 495 Pfam Coproporphyrinogen III oxidase 126 275 IPR001260 GO:0004109|GO:0006779
Cmo16g00542 495 Gene3D Coproporphyrinogen III oxidase, aerobic 85 280 IPR036406 GO:0004109|GO:0006779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00542 K00228 CPOX, hemF; coproporphyrinogen III oxidase [EC:1.3.3.3] - olu:OSTLU_30642 369.007
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1101 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo16g00542 . . . . Cpe14g00420 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009248 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00542 Cmo_Chr16 FPKM 84.228813 87.910469 70.32962 73.429779 70.444809 73.632042 73.751816 113.773247 115.273506 115.094925