Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00550 ATGGATATGGCTGACCCTCAGAACGACGCCGTTCTTGCCTACCCTCACAATAACCTCAATAATAATAATAATCTCCACCAGCTTCCCCTCCTCACTGTTACTCTCAAGTTTGAAGAAGTTGTTTACAAAGTGAAATTAGAAGGGAAAGGCGGCGGCGGAGGCGGCGGATGCTGCGGCGGTGGTGGTTCATGGGGCGGCACTAGAGAAAAAACCATTCTAAACGGAATAAGTGGAGTTGTTTTCCCCGGCGAAATACTCGCCATGCTTGGCCCTTCCGGCAGCGGAAAGACCACCCTTTTGACTGCACTTGGCGGCCGTCTCTCCGGCAAACTCTCCGGCAAAATCACTTACAATGGCCACCCATTTTCCGGCGCTACCAAGCGCCGGACCGGCTTCGTCGCCCAAGACGACGTTTTATACCCTCATTTAACCGTCGCCGAAACCCTCCTCTTCACCGCCCTCCTCCGCCTTCCTTCCTCCCTTACTGCCGACGAAAAAGCCCAAGCCGTTGAGCGAGTCATCTCCGAGTTGGGTCTCACTCGCTGCCGCAACAGCATGATCGGCGGCCCACTTTTCCGGGGAATCTCCGGCGGAGAGAAAAAAAGAGTCAGTATCGGTCAAGAGATGCTGATTAACCCTAGCTTGCTTTTGCTCGACGAACCCACCTCCGGTTTGGACTCCACAACCGCCATGAGAATTATCACCACCGTTAAACGCCTCGCCGCCGGTGGTCGGACAGTTGTCACGACAATTCATCAGCCGTCCAGCCGCCTTTACCACATGTTTGATAAGGTTGTTTTGCTGTCGGAAGGCAGCCCAATTTATTACGGCGCAGCTTCAACCGCCATGGATTATTTCTCCTCCATTGGATTCTCTACCTCCATTACCATCAATCCAGCTGATCTCCTTCTCGATCTTGCAAATGGAATCGGTCCTGATTCGAAATATGCAAACGACGGAGGAGAGAACATGGAGCAAGAACAAAAGGGTGTGAAAGAAGCCCTAATTTCAGCTTATGATAAGAACATTTCCTCCACATTGAAGGATGAGCTTTGTAGTTTGGATGCTAATAACTTCACTAACTATGCAAAAGATGCCTCAAAGAGAGAGAGGAGATCAAGAGAAGAGTGGTGCACGAGCTGGTGGTATCAATTCAGAGTGCTATTGCAAAGAGGGCTAAAGGAGAGAAGGTATGACGCCTTCAACAAGCTAAGGATCTTTCAAGTCATAAGTGTAGCCATTCTTGGTGGACTCCTTTGGTGGCACACTCCGACATCCCACATCGAAGATCGTATAGCGTTGTTGTTCTTCTTCTCCGTCTTCTGGGGCTTCTACCCGCTCTACAACGCCGTATTCACCTTCCCACAAGAACGCACCATGCTAATCAAAGAGCGATCCTCCGGCATGTACCGTCTCTCCTCCTACTTCCTCGCCCGAACCATCGGTGACCTTCCTTTAGAACTCGCTCTCCCGACCGCCTTCGTTTTCATAATCTACTTCATGGGTGGCCTCAACCCTCACCCTCCCACCTTCCTCCTCTCCCTCCTCGTCGTCCTCTATAGCGTCCTCGTCTCGCAGAGCCTCGGCTTGGCATTCGGTGCCATTCTCATGGATGTCAAGCAAGCCACGACGCTCGCTTCCGTCACAACGCTCGTCTTCCTCATCGCTGGCGGCTACTACATTCAACAAATTCCTCCGTTCATTGTGTGGCTTAAGTATCTCAGCTATAGCTTCTATTGCTACAAGCTTCTGTTGGGTGTGCAGTACAAAAACGACGACGTTTATGAGTGTGGGAAAGGGGAGTTTTGTCGGGTGGCGGATTTTCCGGCGGTTAAGTCGGTCGGGTTGGACCGGCTTTGGGTTGATGTTTGTATTATGGCGCTCATGCTGGTTGGGTATCGGCTGGTTGCTTTCTTGGCTCTTCATAGGGTGAGATTGAGATGA 1944 51.23 MDMADPQNDAVLAYPHNNLNNNNNLHQLPLLTVTLKFEEVVYKVKLEGKGGGGGGGCCGGGGSWGGTREKTILNGISGVVFPGEILAMLGPSGSGKTTLLTALGGRLSGKLSGKITYNGHPFSGATKRRTGFVAQDDVLYPHLTVAETLLFTALLRLPSSLTADEKAQAVERVISELGLTRCRNSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAMRIITTVKRLAAGGRTVVTTIHQPSSRLYHMFDKVVLLSEGSPIYYGAASTAMDYFSSIGFSTSITINPADLLLDLANGIGPDSKYANDGGENMEQEQKGVKEALISAYDKNISSTLKDELCSLDANNFTNYAKDASKRERRSREEWCTSWWYQFRVLLQRGLKERRYDAFNKLRIFQVISVAILGGLLWWHTPTSHIEDRIALLFFFSVFWGFYPLYNAVFTFPQERTMLIKERSSGMYRLSSYFLARTIGDLPLELALPTAFVFIIYFMGGLNPHPPTFLLSLLVVLYSVLVSQSLGLAFGAILMDVKQATTLASVTTLVFLIAGGYYIQQIPPFIVWLKYLSYSFYCYKLLLGVQYKNDDVYECGKGEFCRVADFPAVKSVGLDRLWVDVCIMALMLVGYRLVAFLALHRVRLR 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2653973 2657229 - CmoCh16G005500.1 Cmo16g00550 399585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00550 647 Pfam ABC-2 type transporter 252 315 IPR043926 GO:0140359
Cmo16g00550 647 SMART AAA_5 82 272 IPR003593 -
Cmo16g00550 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 289 IPR027417 -
Cmo16g00550 647 ProSitePatterns ABC transporters family signature. 195 209 IPR017871 GO:0005524
Cmo16g00550 647 CDD ABCG_EPDR 70 277 - -
Cmo16g00550 647 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 30 643 - -
Cmo16g00550 647 Pfam ABC transporter 73 223 IPR003439 GO:0005524
Cmo16g00550 647 Gene3D - 63 289 IPR027417 -
Cmo16g00550 647 PANTHER ABC TRANSPORTER, G1, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 30 643 - -
Cmo16g00550 647 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 35 295 IPR003439 GO:0005524
Cmo16g00550 647 Pfam ABC-2 type transporter 383 589 IPR013525 GO:0016020|GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00550 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101219742 1133.24
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00554 Cmo16g00550 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00554 Cmo-Chr6:2680272 Cmo16g00550 Cmo-Chr16:2653973 0 dispersed
Cmo14g00380 Cmo-Chr14:1764260 Cmo16g00550 Cmo-Chr16:2653973 0 dispersed
Cmo15g01499 Cmo-Chr15:10169617 Cmo16g00550 Cmo-Chr16:2653973 0 dispersed
Cmo16g00550 Cmo-Chr16:2653973 Cmo16g00851 Cmo-Chr16:4504237 0 dispersed
Cmo16g00550 Cmo-Chr16:2653973 Cmo04g00647 Cmo-Chr4:3214782 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g968 . . . . . Bpe07g00048 . . Cmo06g00554 Cmo16g00550 . . . . . Cpe14g00425 . . . . . . . . . . . . . . . . . . Cone9ag0341 . . . . . . . . . . . Bma12g00629 . . . Cma06g00550 Cma16g00503 Car06g00489 . Cpe01g00545 . . . . . . . . . . . . . . . . Csa04g00716 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001139 3 3 3 3 3 2 2 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 3 3 1 3 3 3 3 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00550 Cmo_Chr16 FPKM 0.187978 0.164013 5.947302 4.755031 7.141291 7.071686 7.598048 1.236871 2.373286 1.889515