Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00553 ATGTTCTGTTTCGCCGCCGTCATCGCCGCCTTCTTTCTTCTTCTTCTTCATTTTCTTTTCAAATTCTCCGCCCCTGCTCGCCGGAAACTTCCCCTTCCGCCGGGCTCAATGGGCTGGCCTTACATGGGTGAAACCCTCCAACTCTACTCGCAAGATCCCAATGTCTTCTTCGCCTCAAAGAAGAAGAGATATGGTCCTATTTTCAAGTCCCACATATTGGGTTATCCTTGTGTGATGGTTTCTAGCCCTGAAGCTGCTAAGTTTGTGTTGGTCACTAAAGCTCATCTCTTTAAGCCTACATTTCCAGCCAGTAAAGAAAGGATGTTGGGCAAAAATGCCATCTTCTTTCACCAAGGTGACTACCATGCTAAATTACGACGCCTCGTTCTTCGAACATTCATGCCTGAAGCGATTCGAAACATCGTCCCGAGTATCGAATCCATTGCTAAGAACACTGTTCAATCATGGGATGGACAATTGATCAATACCTTCCAAGAAATGAAGATGTTTGCATTCGAGGTTTCTTTACTTTCGATATTTGGAAAAGAAGAAGCTCTTTACTTCGAAGACTTGAAGCGATGCTATTACACACTTGAAAAAGGGTACAATTCAATGCCGATAAACCTGCCAGGAACACTCTTCCACAAGGCCATGAAAGCAAGAAAAGAGCTAGCACATATCTTAACCAAGATCCTCTCAACCAGAAGGGAAATGAAGCGCGATCACAACGATCTCCTTGGATCTTTCATGGGTGAAAAGGAAGGCCTCACCGATGAACAGATCGCCGATAACGTCATCGGTCTAATCTTCGCTGCTCGGGATACGACCGCGAGTGTTCTAACATGGATCTTGAAGTATCTAGGAGAAAACCCAAGTGTTCTTCAAGCTGTCACTGATGAACAAGAAGCAATCATGAAGGAAAAACAGAGTGGAGATGATAATCTCACCTGGGCTGACACCAAAAACATGCCGATCACTTCAAGGGTGATTCAAGAAACTCTAAGAGTTGCTTCAGTTCTATCATTTACCTTCAGAGAAGCAGTGGAAGATGTAGAATTTGACGGCTATTTGATTCCAAAAGGATGGAAAGTTCTTCCTCTTTTCAGAAACATTCATCACAGCCCAGAAAATTTCCCTCAACCTGACAAGTTCGATCCTTCAAGATTCGAGGTAAAAACAGAGGAAACAAAGCACAGTGTCCCTCAAAAACCCAATACCTACATGCCATTTGGCAATGGAACCCACTCTTGTCCAGGAAATGAACTGGCCAAGCTCGAAATGCTCGTTCTTCTCCATCATTTAACCACCAAGTACAGATGGAGTGTAGTGGGCGCTCAAGAAGGCATTCAATACGGTCCTTTTGCGCTTCCCCATAATGGGCTTCCCATTAAAATCTCTCTGAAGAAGTAA 1410 44.11 MFCFAAVIAAFFLLLLHFLFKFSAPARRKLPLPPGSMGWPYMGETLQLYSQDPNVFFASKKKRYGPIFKSHILGYPCVMVSSPEAAKFVLVTKAHLFKPTFPASKERMLGKNAIFFHQGDYHAKLRRLVLRTFMPEAIRNIVPSIESIAKNTVQSWDGQLINTFQEMKMFAFEVSLLSIFGKEEALYFEDLKRCYYTLEKGYNSMPINLPGTLFHKAMKARKELAHILTKILSTRREMKRDHNDLLGSFMGEKEGLTDEQIADNVIGLIFAARDTTASVLTWILKYLGENPSVLQAVTDEQEAIMKEKQSGDDNLTWADTKNMPITSRVIQETLRVASVLSFTFREAVEDVEFDGYLIPKGWKVLPLFRNIHHSPENFPQPDKFDPSRFEVKTEETKHSVPQKPNTYMPFGNGTHSCPGNELAKLEMLVLLHHLTTKYRWSVVGAQEGIQYGPFALPHNGLPIKISLKK 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2690840 2693447 + CmoCh16G005530.1 Cmo16g00553 399588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00553 469 Gene3D Cytochrome P450 23 467 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo16g00553 469 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 410 419 IPR017972 GO:0005506|GO:0016705
Cmo16g00553 469 PRINTS E-class P450 group I signature 280 306 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo16g00553 469 PRINTS E-class P450 group I signature 327 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo16g00553 469 PRINTS E-class P450 group I signature 367 391 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo16g00553 469 PRINTS E-class P450 group I signature 407 417 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo16g00553 469 PRINTS E-class P450 group I signature 260 277 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo16g00553 469 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo16g00553 469 PRINTS E-class P450 group I signature 417 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo16g00553 469 PANTHER ABSCISIC ACID 8'-HYDROXYLASE CYP707A2 8 466 - -
Cmo16g00553 469 Pfam Cytochrome P450 33 444 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo16g00553 469 PRINTS P450 superfamily signature 408 417 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo16g00553 469 PRINTS P450 superfamily signature 328 339 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo16g00553 469 PRINTS P450 superfamily signature 271 288 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo16g00553 469 PRINTS P450 superfamily signature 417 428 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo16g00553 469 PANTHER CYTOCHROME P450 26 8 466 - -
Cmo16g00553 469 SUPERFAMILY Cytochrome P450 27 465 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01899 Cmo-Chr1:13671091 Cmo16g00553 Cmo-Chr16:2690840 0 dispersed
Cmo05g00185 Cmo-Chr5:818448 Cmo16g00553 Cmo-Chr16:2690840 0 dispersed
Cmo16g00553 Cmo-Chr16:2690840 Cmo19g00623 Cmo-Chr19:6822808 3.53E-146 dispersed
Cmo01g00644 Cmo-Chr1:3292627 Cmo16g00553 Cmo-Chr16:2690840 0 transposed
Cmo16g00553 Cmo-Chr16:2690840 Cmo04g00643 Cmo-Chr4:3182160 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00553 K09843 - csv:101212508 845.884