Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo16g00558 | ATGGGAGCCAGTGGGAGTAAGTTGTCGAGTAGTTCGCCGCCGCCGCCGCCGCCGCCACCACCGTCGGCGGCGGCGGCGAATCTCTCATGTTCTGGGAGAATCCGGAGGGGGAGATCCAAAGGCCGTAGAGTTTTCCAGTCTGCTTGCCTCGGTACCCCCTCTGGATCGCACCACAGCGACAATGACGATAATGATTGTAAAAGTGAGAACAAAAAGAATGCTCATGATTATTCATCTGCAAATCAGACTGATCAAGCTAATGATCAGATGAAAATCGAGGGTTACAGAAGGGTCAAAGCTGAGGAATCTCTTGAAATGCCTTGCGTATCATCAAATGTTGAGTTTGATGGATGGGATCAAGCAGGTGTTGCTGTTGCAGCAGCAGCTCCCAGAGCTGGAAGTACCTCTGCTCGTGTATCGTCCCTGCAATCGTTGAACCCTTCGAGTAACTTCCTTTCTCGCTTTAGTTTCATTCCTGGTAATATAAGCTTCAGACTTAGTAGAGCAAGCAGTTTAGGATCATCTAGATCTTTTCCTGTGTCTTCAACAAATCTTTCAATGTTGAACGATGAAGCCGAGCTTCATTTATCAGACAGACCTGCTGGAGGCTTGGGTGCTCAAGATGAAACTCAGCAAGGTAGTGACGTGCTTCCTGTGTCGCTGGCTAGTGCAACTCGTGCTCAATGTTATGGAGATAGTCATGCCAATTTTAGGCTAAATACACAAAATTTGAGTCTTTCTGATAACTTACAAGACAATCAGTCAGTTGGAAACCTTTCCCATGCTCAAACTCTACCTGAAAATGAAAGCAGTGAGATTAGACAACCTGACAGGCGGACTGGATCTAGGGAACCGGTTGAACGCAATTTTCGTTTCAGTCGGACCCTTAGTGTTGGAAGACTGCGTGATAGAGTTCTTCGTAGATCATCATTGTCTGATTTCACATTTTGTCCTCCACAACAAGATGGTGAAGAGAGAGATGCAAGTCACAGTGGTGATGGTGGACATGTCTGGACTGCTGAGACGAGGGCGTTGGCATCCGTAGATAATGCTATGACCTCGCCAACAACATCGGGTTATCCAGCTTCTAGTCTATCCAGTTCATTGTTCAGCACCCAAGGTTTTGAAATGGAAACTACACGACCTAGAGAAGCTAGATATCATGATCTGCTGGAACACAGATCAAATTTCCTCGAACGGAGAAGACGAATACGGTCCCAGGTTCGTGCCTTACAGCGGTTGGGAAGTCGCTTTGAGAACCTATCTGGGCACGAGAGATCGTGCATATTATCCGGTCAACATAGAACCAGTCATTGTACTTGTCGTATCAACAATCGTGACACAAACGTAAACGATAACACAAGTGCTAGAGCCAGTATATCAAGAATTGTAATGTTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTTTTATCCTCCCGCCCCGCGTCTTCTTTTGGCTCTCTGCCTGCTCCGAACGCTGTTGTAGATTCTTTGCCTGTTAAATTTCATTCCAAGTTGCAAAAGCATCAAAACGAGGAAGCTGCCCAATGCTACATATGCCTGGTTGAGTACGAGGAAGGGGATAGCATGAGAGTGTTGCCTTGCCATCATGAATTTCACGCAGCATGTGTCGACAAGTGGCTGAAGGAGATCCACAGGTATTATCGGGTCCATGTACCGTTTTCTTGCTTCTTGAACTGGTGTGCCCGCTCTGTCGAGGGGACATATGCAGCAGATCTGATGCGTCATCAGACGATGTTAAGTGAAAACAATTCGTTTCCATCCAAAACGTGCTGTCTTCTGTGTATGCTTAGAAATCGAGTGATGGCTGCTAGCTAG | 1860 | 46.56 | MGASGSKLSSSSPPPPPPPPPSAAAANLSCSGRIRRGRSKGRRVFQSACLGTPSGSHHSDNDDNDCKSENKKNAHDYSSANQTDQANDQMKIEGYRRVKAEESLEMPCVSSNVEFDGWDQAGVAVAAAAPRAGSTSARVSSLQSLNPSSNFLSRFSFIPGNISFRLSRASSLGSSRSFPVSSTNLSMLNDEAELHLSDRPAGGLGAQDETQQGSDVLPVSLASATRAQCYGDSHANFRLNTQNLSLSDNLQDNQSVGNLSHAQTLPENESSEIRQPDRRTGSREPVERNFRFSRTLSVGRLRDRVLRRSSLSDFTFCPPQQDGEERDASHSGDGGHVWTAETRALASVDNAMTSPTTSGYPASSLSSSLFSTQGFEMETTRPREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTSHCTCRINNRDTNVNDNTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPASSFGSLPAPNAVVDSLPVKFHSKLQKHQNEEAAQCYICLVEYEEGDSMRVLPCHHEFHAACVDKWLKEIHRYYRVHVPFSCFLNWCARSVEGTYAADLMRHQTMLSENNSFPSKTCCLLCMLRNRVMAAS | 619 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 2721042 | 2724079 | - | CmoCh16G005580.1 | Cmo16g00558 | 399593 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo16g00558 | 619 | MobiDBLite | consensus disorder prediction | 316 | 335 | - | - | |
Cmo16g00558 | 619 | MobiDBLite | consensus disorder prediction | 58 | 74 | - | - | |
Cmo16g00558 | 619 | MobiDBLite | consensus disorder prediction | 271 | 286 | - | - | |
Cmo16g00558 | 619 | Pfam | RING-like zinc finger | 523 | 551 | IPR001841 | - | |
Cmo16g00558 | 619 | MobiDBLite | consensus disorder prediction | 1 | 90 | - | - | |
Cmo16g00558 | 619 | MobiDBLite | consensus disorder prediction | 75 | 89 | - | - | |
Cmo16g00558 | 619 | ProSiteProfiles | Zinc finger RING-type profile. | 524 | 570 | IPR001841 | - | |
Cmo16g00558 | 619 | MobiDBLite | consensus disorder prediction | 259 | 286 | - | - | |
Cmo16g00558 | 619 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 488 | 575 | IPR013083 | - | |
Cmo16g00558 | 619 | SUPERFAMILY | RING/U-box | 507 | 559 | - | - | |
Cmo16g00558 | 619 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 561 | - | - | |
Cmo16g00558 | 619 | MobiDBLite | consensus disorder prediction | 10 | 24 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo10g00532 | Cmo-Chr10:2408983 | Cmo16g00558 | Cmo-Chr16:2721042 | 3.62E-40 | dispersed | |
Cmo11g00494 | Cmo-Chr11:2386558 | Cmo16g00558 | Cmo-Chr16:2721042 | 7.11E-37 | dispersed | |
Cmo16g00558 | Cmo-Chr16:2721042 | Cmo06g01216 | Cmo-Chr6:9250066 | 1.72E-09 | dispersed | |
Cmo16g00558 | Cmo-Chr16:2721042 | Cmo04g00637 | Cmo-Chr4:3150021 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo16g00558 | - | - | csv:101213468 | 875.159 |