Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00558 ATGGGAGCCAGTGGGAGTAAGTTGTCGAGTAGTTCGCCGCCGCCGCCGCCGCCGCCACCACCGTCGGCGGCGGCGGCGAATCTCTCATGTTCTGGGAGAATCCGGAGGGGGAGATCCAAAGGCCGTAGAGTTTTCCAGTCTGCTTGCCTCGGTACCCCCTCTGGATCGCACCACAGCGACAATGACGATAATGATTGTAAAAGTGAGAACAAAAAGAATGCTCATGATTATTCATCTGCAAATCAGACTGATCAAGCTAATGATCAGATGAAAATCGAGGGTTACAGAAGGGTCAAAGCTGAGGAATCTCTTGAAATGCCTTGCGTATCATCAAATGTTGAGTTTGATGGATGGGATCAAGCAGGTGTTGCTGTTGCAGCAGCAGCTCCCAGAGCTGGAAGTACCTCTGCTCGTGTATCGTCCCTGCAATCGTTGAACCCTTCGAGTAACTTCCTTTCTCGCTTTAGTTTCATTCCTGGTAATATAAGCTTCAGACTTAGTAGAGCAAGCAGTTTAGGATCATCTAGATCTTTTCCTGTGTCTTCAACAAATCTTTCAATGTTGAACGATGAAGCCGAGCTTCATTTATCAGACAGACCTGCTGGAGGCTTGGGTGCTCAAGATGAAACTCAGCAAGGTAGTGACGTGCTTCCTGTGTCGCTGGCTAGTGCAACTCGTGCTCAATGTTATGGAGATAGTCATGCCAATTTTAGGCTAAATACACAAAATTTGAGTCTTTCTGATAACTTACAAGACAATCAGTCAGTTGGAAACCTTTCCCATGCTCAAACTCTACCTGAAAATGAAAGCAGTGAGATTAGACAACCTGACAGGCGGACTGGATCTAGGGAACCGGTTGAACGCAATTTTCGTTTCAGTCGGACCCTTAGTGTTGGAAGACTGCGTGATAGAGTTCTTCGTAGATCATCATTGTCTGATTTCACATTTTGTCCTCCACAACAAGATGGTGAAGAGAGAGATGCAAGTCACAGTGGTGATGGTGGACATGTCTGGACTGCTGAGACGAGGGCGTTGGCATCCGTAGATAATGCTATGACCTCGCCAACAACATCGGGTTATCCAGCTTCTAGTCTATCCAGTTCATTGTTCAGCACCCAAGGTTTTGAAATGGAAACTACACGACCTAGAGAAGCTAGATATCATGATCTGCTGGAACACAGATCAAATTTCCTCGAACGGAGAAGACGAATACGGTCCCAGGTTCGTGCCTTACAGCGGTTGGGAAGTCGCTTTGAGAACCTATCTGGGCACGAGAGATCGTGCATATTATCCGGTCAACATAGAACCAGTCATTGTACTTGTCGTATCAACAATCGTGACACAAACGTAAACGATAACACAAGTGCTAGAGCCAGTATATCAAGAATTGTAATGTTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTTTTATCCTCCCGCCCCGCGTCTTCTTTTGGCTCTCTGCCTGCTCCGAACGCTGTTGTAGATTCTTTGCCTGTTAAATTTCATTCCAAGTTGCAAAAGCATCAAAACGAGGAAGCTGCCCAATGCTACATATGCCTGGTTGAGTACGAGGAAGGGGATAGCATGAGAGTGTTGCCTTGCCATCATGAATTTCACGCAGCATGTGTCGACAAGTGGCTGAAGGAGATCCACAGGTATTATCGGGTCCATGTACCGTTTTCTTGCTTCTTGAACTGGTGTGCCCGCTCTGTCGAGGGGACATATGCAGCAGATCTGATGCGTCATCAGACGATGTTAAGTGAAAACAATTCGTTTCCATCCAAAACGTGCTGTCTTCTGTGTATGCTTAGAAATCGAGTGATGGCTGCTAGCTAG 1860 46.56 MGASGSKLSSSSPPPPPPPPPSAAAANLSCSGRIRRGRSKGRRVFQSACLGTPSGSHHSDNDDNDCKSENKKNAHDYSSANQTDQANDQMKIEGYRRVKAEESLEMPCVSSNVEFDGWDQAGVAVAAAAPRAGSTSARVSSLQSLNPSSNFLSRFSFIPGNISFRLSRASSLGSSRSFPVSSTNLSMLNDEAELHLSDRPAGGLGAQDETQQGSDVLPVSLASATRAQCYGDSHANFRLNTQNLSLSDNLQDNQSVGNLSHAQTLPENESSEIRQPDRRTGSREPVERNFRFSRTLSVGRLRDRVLRRSSLSDFTFCPPQQDGEERDASHSGDGGHVWTAETRALASVDNAMTSPTTSGYPASSLSSSLFSTQGFEMETTRPREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTSHCTCRINNRDTNVNDNTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPASSFGSLPAPNAVVDSLPVKFHSKLQKHQNEEAAQCYICLVEYEEGDSMRVLPCHHEFHAACVDKWLKEIHRYYRVHVPFSCFLNWCARSVEGTYAADLMRHQTMLSENNSFPSKTCCLLCMLRNRVMAAS 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2721042 2724079 - CmoCh16G005580.1 Cmo16g00558 399593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00558 619 MobiDBLite consensus disorder prediction 316 335 - -
Cmo16g00558 619 MobiDBLite consensus disorder prediction 58 74 - -
Cmo16g00558 619 MobiDBLite consensus disorder prediction 271 286 - -
Cmo16g00558 619 Pfam RING-like zinc finger 523 551 IPR001841 -
Cmo16g00558 619 MobiDBLite consensus disorder prediction 1 90 - -
Cmo16g00558 619 MobiDBLite consensus disorder prediction 75 89 - -
Cmo16g00558 619 ProSiteProfiles Zinc finger RING-type profile. 524 570 IPR001841 -
Cmo16g00558 619 MobiDBLite consensus disorder prediction 259 286 - -
Cmo16g00558 619 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 488 575 IPR013083 -
Cmo16g00558 619 SUPERFAMILY RING/U-box 507 559 - -
Cmo16g00558 619 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 561 - -
Cmo16g00558 619 MobiDBLite consensus disorder prediction 10 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00532 Cmo-Chr10:2408983 Cmo16g00558 Cmo-Chr16:2721042 3.62E-40 dispersed
Cmo11g00494 Cmo-Chr11:2386558 Cmo16g00558 Cmo-Chr16:2721042 7.11E-37 dispersed
Cmo16g00558 Cmo-Chr16:2721042 Cmo06g01216 Cmo-Chr6:9250066 1.72E-09 dispersed
Cmo16g00558 Cmo-Chr16:2721042 Cmo04g00637 Cmo-Chr4:3150021 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00558 - - csv:101213468 875.159