Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00559 ATGGATTGGGCATTCGTCCGCAAAGCTTGGGACAAATGGGCTTCCGGCAGCATTGGCACCTTCGGTAACCAACACCGACCGCCATTTTCAATTCGTCAGCCATTGAAAGCTGCTCTGTTGATCAATTATGATCCTACTGGACCTTCCCGTTTGCTTTCGACCATTGCAGAACAAGAAGGAATATTGCTTAATCCTATAGAACTGAATCAGTTTATCGATTTCATCAAACGTGACAAACCCCAAAATGAGAGTTTCAGCATCGGCTCAAATCAATACATAATGACATCAGTCCATGAGAATTGGTTTTGTGCAAGGTGCATGAACACTATAAAGCATGCTGGTGAAGGCGTTGTTATAGTGCAAACAACAGCCTTTATTTTGGTTGCTATGTATGATGGCTCGATTGCAGCAGCGTCTCGCGCTATGGCGTCTGCCGATCAGTTATCTGGGCAGTTAGGCAGGAAAAATCTTTAG 474 44.51 MDWAFVRKAWDKWASGSIGTFGNQHRPPFSIRQPLKAALLINYDPTGPSRLLSTIAEQEGILLNPIELNQFIDFIKRDKPQNESFSIGSNQYIMTSVHENWFCARCMNTIKHAGEGVVIVQTTAFILVAMYDGSIAAASRAMASADQLSGQLGRKNL 157
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
16 2726719 2728946 - CmoCh16G005590.1 Cmo16g00559 399594
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00559 157 Pfam Profilin 53 153 IPR005455 GO:0003779
Cmo16g00559 157 Gene3D Dynein light chain 2a, cytoplasmic 31 155 - -
Cmo16g00559 157 PANTHER OS05G0241400 PROTEIN 1 157 - -
Cmo16g00559 157 SUPERFAMILY Profilin (actin-binding protein) 29 149 IPR036140 -
Cmo16g00559 157 PANTHER OS05G0241400 PROTEIN 1 157 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00559 Cmo-Chr16:2726719 Cmo04g00636 Cmo-Chr4:3147249 1.53E-08 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00559 - - csv:105435190 271.166