Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00560 ATGGGAGGCGGCAGGAATTGTCTGCGGCGGACTATGACCATAAAGTTAGGCCCCCACTCCACCCGATCACCGTCAATCACTTTCTTCACGCATCACACATCCTCACCGTCCATTTCCATCGCCCATGATCACGATCATCCATTGGTGACTCAAGCTATCCTTCGTTACCAAGAAAAATTAAAGCCGTTTGATTCTCCATTCCTGACTTTTCTTCTTCGCTTTCTGTTTCAGTTCTATGTCTCTTCCTCTGTGTTTGATGTGTGTAATGTGAAGAAGATGGCCAGAGAAGACTTCGGTTTATGGCTATTCTTGGTTGCATCTCTGCAGTTTTTCCTTAGAACACAGTGTATTAATGTGGGGATTACTTATGTTCAAGAAGCTGGTATCAAAGGAGGCGTTTGTTTGGATGGAAGTCCTCCAGCGTATCATTTCAGCGAAGGGTTCGGCGCTGGGATCGATAATTGGTTGATACAACTCGAGGGAGGAGGATGGTGCAACAATGTCACGACCTGTCTCCAACGCAGGGACACTCGTTTAGGCTCGTCTAGGAAAATGGTTAAAGTTCTTGCGTTCTCGGGGATTTTGACCAATAAACAAAAATTCAATCCAGATTTTTATAACTGGAACAGAATCAAGGTTCGGTACTGTGATGGATCTTCTTTCACTGGAGATGTTGAAGCGGTTGATCCTGCTACCAATCTGCATTTCAGAGGAGCAAGAGTTTTTCGTGCTATCATTGATAACTTACTCGCCAAAGGAATGAAGAATGCGAAGAACGCTATTCTCTCCGGTTGTTCCGCGGGCGGATTAAGTTCGATTTTGAATTGTGATCATTTCAAATCTCTACTTCCTTCTACTACTAAAGTAAAGTGCCTCTCAGATGCTGGATACTTCATTAACGCGAAAGATGTCTCTGGCACACAGCACATCGCGGACTTCTACAGCGACGTAGTTGCTACCCATGCTTCTGCTAAGAATTTGCCTATATCATGCACATCAAAAATGAAACCAGAGATGTGTTTCTTTCCCCAAAACGTGGTTCAGCTCATTCAGACACCAATATTTCTTGTAAATGCAGCCTATGATTCATGGCAGATCAAGAACATACTGGCGCCCGGCGTTGCCGATCCGCACGGTACTTGGCACAGCTGCAAGCTCGACATCAAGAACTGCTCGCCTATTCAGCTACGAACCATGCAAGATTTCAGGGTTCAGTTCTTGAGTGCATTGAATGGCGTTGGAAGTTCTTTATCTAGAGGATTGTTCATAGATTCTTGCTATGCTCATTGCCAAACGGAAACGCAGGAGACATGGCTACGAGCAGACTCTCCCACGCTGAGTAAGACGGTAAGTAATCAACATGAATGCCATTGCCTTTGCCATTGTTCTTCAAACTATACCAACTCTTTTCATGAATTGGAATATGCAGACCATTGCAAAGGCAGTTGGAGACTGGTATTTCGACAGGAGTCCGTTCCAGAAGATCGATTGTCCTTACCCGTGCAACCCGACATGCCACAACCGCATTTTCGAAGCAAAAGACAACCTCGAATGAGGGATCTATTACAACAATTACGTTATAACTTACGATAA 1593 44.63 MGGGRNCLRRTMTIKLGPHSTRSPSITFFTHHTSSPSISIAHDHDHPLVTQAILRYQEKLKPFDSPFLTFLLRFLFQFYVSSSVFDVCNVKKMAREDFGLWLFLVASLQFFLRTQCINVGITYVQEAGIKGGVCLDGSPPAYHFSEGFGAGIDNWLIQLEGGGWCNNVTTCLQRRDTRLGSSRKMVKVLAFSGILTNKQKFNPDFYNWNRIKVRYCDGSSFTGDVEAVDPATNLHFRGARVFRAIIDNLLAKGMKNAKNAILSGCSAGGLSSILNCDHFKSLLPSTTKVKCLSDAGYFINAKDVSGTQHIADFYSDVVATHASAKNLPISCTSKMKPEMCFFPQNVVQLIQTPIFLVNAAYDSWQIKNILAPGVADPHGTWHSCKLDIKNCSPIQLRTMQDFRVQFLSALNGVGSSLSRGLFIDSCYAHCQTETQETWLRADSPTLSKTVSNQHECHCLCHCSSNYTNSFHELEYADHCKGSWRLVFRQESVPEDRLSLPVQPDMPQPHFRSKRQPRMRDLLQQLRYNLR 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2729529 2734647 - CmoCh16G005600.1 Cmo16g00560 399595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00560 530 PANTHER NOTUM-RELATED 99 449 IPR004963 GO:0016787
Cmo16g00560 530 Pfam Pectinacetylesterase 115 450 IPR004963 GO:0016787
Cmo16g00560 530 PANTHER PECTIN ACETYLESTERASE 99 449 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00130 Cmo-Chr16:605501 Cmo16g00560 Cmo-Chr16:2729529 1.34E-114 dispersed
Cmo16g00560 Cmo-Chr16:2729529 Cmo18g01274 Cmo-Chr18:12377830 4.58E-86 dispersed
Cmo16g00560 Cmo-Chr16:2729529 Cmo04g00635 Cmo-Chr4:3142756 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00560 K19882 - csv:101214431 681.789