Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00562 ATGCATTTGACAAGATTCAAAATCAATAAGACAGTTCCTGTAGTATTTCCCTTTTCGCGTCAGGTGGCCTGTGTGTTATCCACCGAACCGCATAAAGAACATCACCAGGACCCGCCATGGCAGCTCCAGGATCAGTTGCTCTATTCGGTATCTTCTATTCTCTCTAATTCGTCTCTCGACTCTTCTAAATGTAGAGCCCTCTTGCCCCATTTGTCTCCTTTTCAGTTTGATCATCTCTTCTTCTCCGTTGGATTGAAAGCCAATCCCAAAACTTGTCTTAATTTCTTTTACTTTGCGTCTGATTCTTTCAAGTTTCGATTTACCATTCGCTCCTATTGTTTATTGATTCTTTTGCTTGTTCATTCCAAGTTTTTACCACCCGCGAGATTGCTTCTGATTCGTTTGATAGACGGGAAGCTCCCGGTGTTGAATTCGGATTCGAATAAGCTTCACATTGAGATAGCTAATGAATTATTTGGTTTAACTTCAGTTGTTGGGCGGTTTGAATGCACACATGCATTTGATTTGTTGATACATGTATACAGCACACAATTCAGAAATCTTGGCTTTAGTTACGCTGTTGATGTGTTTTATTTGTTTGCTCGCAACGGGATCTTTCCGTCCTTAAAGACTTGTAACTTTTTATTGAGCTCTTTGGTGAAGGCTAATGAACTTGAGAAATGCTGTGAAGTATTTGAAGTGATGTCCCAAGGTGTTCGTCCAGATGTTTTCCTGTTCACGAATGTAATAAATGCTTTGTGCAAAGGAGGGAAGATGGAAAATGCCATGGAGTTATTAATGAATATGGAGAAGTTGGGTATTTCTCCAAATGTTGTTACTTATAATAGTATCATTCATGGTTTATGCCAGAATGGGAGATTAGGCGATGCCTTTGAGCTAAAGGAGAAGATGACAATAGAAGGGGTAAAGCCAAGTCTTATAACTTATAGTGTGCTTATTAATGGTTTGACGAAACTGGAAAAATTTGACAAAGCGAACGATGTTTTAAATGAAATGGTTGGTGCGGGTTTTGTTCCGAATGCAGTTGTCTACAATACTTTAATTGATGGATACTGCAAAATGGGCAAGATCAATGAAGCACTTAAGATTAGAGATGTGATGGTATCCAAAAATATAACTCCTACTTCAGTTACTTTATATACTCTCCTGCAAGGATTTTGCAAGAGTAATCAAATCGAGCAAGCAGAGAATACTCTTGAGGAGATATTATCACAAGGATTTCCTATAAACCCTGTTACCTGTTATTCGGTTATCCACTGGTTATGTACGAAATCTAGGTTCCACTATGCATTGCGATTTACCATGGTGATGTTATCGAAGAACTTCAGGCCTAGTGATCAGCTGTTAACCATATTGGTATGTGGGCTCTGTAAGGACGGTAAACATCTAGAAGCAACTGAACTTTGGTTTAGGTTATTTGAGAAAGGGTCTCCAGCAAGTACCGCAACCTCCAATGCTCTAATTCATGGACTTTGTGGGGCTGGTAAAATGGCAGAGGCTGTTAGAATACTCAAGGAGATGTTGGAGAGGGGTTTTTCATTGGACCGGATCACGTACAACACGTTCATCTTAGGTTGTTGCAAAGAGGGAAAAGTCGAGGAGTGCTTTAGACTTAAAGAAGAGATGACCAACCAAGGAATTCAACCAGACATCTATACGTGCAATTTGCTATTGTATGGACTGTGCAATGCTGGAAAATTAGATGATGCTATTAAGCTTTGGGGTGAATTCAAAGCCAGTGGGTTAATTTCTAATGTCCACACTTATGGGGTTATGATGGATGTTTATTGTAAAGCTAACAGAATGGAAGATGTTGAAAAATTATTCAATGAGTTGGTCACTAAGAAAATGGAGCTAAATTCCATTGTCTACAACATATTTATCAGAGCACATTGCCGTAATGGAAACGTTGCTGCAGCTTTGCAACTTCGTGATGATATGAAAAGCAAGGGAATTTTTCCAACTTGTGCCACATATTCTTCTCTAATACACGGCATGTGCAACATTGGCCTTGTTGAAGATGCAAAACGTCTTATTGATGAAATGAGAGAGGAGGGATTGTTGCCAAATGTTGTTTGCTATACTGCATTAATTGGCGGTTATTGTAAGCTGGGGCAAATGGATATTGCCGAAGCAACTTTTCTCGAGATGACCTCTTTGAACATAAGGCCTAATAAAATTACCTACACTGTCATGATTGACGGGTACTGTAAATTAGGGAATATGGAAGAAGCAAATAACCTTTTGAGCAAAATGAAAGAAAGTGGAATCGTCCCAGATGTCGTTACTTACAATGCCTTGACTAATGGGTTCTGCAAGGGAAAGGACATGGATAAAGCTTTTAAAACATGCGATGAAATGGCCACCGGAGGATTGTCTTTAGATGAAATTACTTACACTACTCTCGTGCACGTATTGTTTAGCTTATGCATTCTGAAATATTGGAGGCTGTCCACCTTCTCTTGTCCAAATGAAAGAGCCAAAGACGAACATCCGTCTTTAGTCTCTGGAGGCTGA 2538 39.48 MHLTRFKINKTVPVVFPFSRQVACVLSTEPHKEHHQDPPWQLQDQLLYSVSSILSNSSLDSSKCRALLPHLSPFQFDHLFFSVGLKANPKTCLNFFYFASDSFKFRFTIRSYCLLILLLVHSKFLPPARLLLIRLIDGKLPVLNSDSNKLHIEIANELFGLTSVVGRFECTHAFDLLIHVYSTQFRNLGFSYAVDVFYLFARNGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSQGVRPDVFLFTNVINALCKGGKMENAMELLMNMEKLGISPNVVTYNSIIHGLCQNGRLGDAFELKEKMTIEGVKPSLITYSVLINGLTKLEKFDKANDVLNEMVGAGFVPNAVVYNTLIDGYCKMGKINEALKIRDVMVSKNITPTSVTLYTLLQGFCKSNQIEQAENTLEEILSQGFPINPVTCYSVIHWLCTKSRFHYALRFTMVMLSKNFRPSDQLLTILVCGLCKDGKHLEATELWFRLFEKGSPASTATSNALIHGLCGAGKMAEAVRILKEMLERGFSLDRITYNTFILGCCKEGKVEECFRLKEEMTNQGIQPDIYTCNLLLYGLCNAGKLDDAIKLWGEFKASGLISNVHTYGVMMDVYCKANRMEDVEKLFNELVTKKMELNSIVYNIFIRAHCRNGNVAAALQLRDDMKSKGIFPTCATYSSLIHGMCNIGLVEDAKRLIDEMREEGLLPNVVCYTALIGGYCKLGQMDIAEATFLEMTSLNIRPNKITYTVMIDGYCKLGNMEEANNLLSKMKESGIVPDVVTYNALTNGFCKGKDMDKAFKTCDEMATGGLSLDEITYTTLVHVLFSLCILKYWRLSTFSCPNERAKDEHPSLVSGG 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2743860 2746684 + CmoCh16G005620.1 Cmo16g00562 399597

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00562 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 767 801 IPR002885 -
Cmo16g00562 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 557 591 IPR002885 -
Cmo16g00562 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 697 731 IPR002885 -
Cmo16g00562 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Cmo16g00562 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Cmo16g00562 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 627 661 IPR002885 -
Cmo16g00562 845 Pfam PPR repeat 211 235 IPR002885 -
Cmo16g00562 845 Pfam PPR repeat 490 519 IPR002885 -
Cmo16g00562 845 Pfam PPR repeat 595 622 IPR002885 -
Cmo16g00562 845 Pfam PPR repeat 457 483 IPR002885 -
Cmo16g00562 845 Pfam PPR repeat 238 270 IPR002885 -
Cmo16g00562 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Cmo16g00562 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Cmo16g00562 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 592 626 IPR002885 -
Cmo16g00562 845 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 28 807 - -
Cmo16g00562 845 Gene3D Tetratricopeptide repeat domain 441 514 IPR011990 GO:0005515
Cmo16g00562 845 Gene3D Tetratricopeptide repeat domain 656 727 IPR011990 GO:0005515
Cmo16g00562 845 Gene3D Tetratricopeptide repeat domain 236 306 IPR011990 GO:0005515
Cmo16g00562 845 Gene3D Tetratricopeptide repeat domain 515 585 IPR011990 GO:0005515
Cmo16g00562 845 Gene3D Tetratricopeptide repeat domain 586 655 IPR011990 GO:0005515
Cmo16g00562 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 662 696 IPR002885 -
Cmo16g00562 845 Pfam PPR repeat family 696 745 IPR002885 -
Cmo16g00562 845 Pfam PPR repeat family 766 813 IPR002885 -
Cmo16g00562 845 Pfam PPR repeat family 276 324 IPR002885 -
Cmo16g00562 845 Pfam PPR repeat family 346 395 IPR002885 -
Cmo16g00562 845 Pfam PPR repeat family 523 570 IPR002885 -
Cmo16g00562 845 Pfam PPR repeat family 627 675 IPR002885 -
Cmo16g00562 845 Gene3D Tetratricopeptide repeat domain 728 817 IPR011990 GO:0005515
Cmo16g00562 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 521 IPR002885 -
Cmo16g00562 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Cmo16g00562 845 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 28 807 - -
Cmo16g00562 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Cmo16g00562 845 TIGRFAM PPR: pentatricopeptide repeat domain 245 278 IPR002885 -
Cmo16g00562 845 TIGRFAM PPR: pentatricopeptide repeat domain 524 558 IPR002885 -
Cmo16g00562 845 TIGRFAM PPR: pentatricopeptide repeat domain 384 417 IPR002885 -
Cmo16g00562 845 TIGRFAM PPR: pentatricopeptide repeat domain 769 802 IPR002885 -
Cmo16g00562 845 TIGRFAM PPR: pentatricopeptide repeat domain 594 627 IPR002885 -
Cmo16g00562 845 TIGRFAM PPR: pentatricopeptide repeat domain 279 312 IPR002885 -
Cmo16g00562 845 TIGRFAM PPR: pentatricopeptide repeat domain 629 663 IPR002885 -
Cmo16g00562 845 TIGRFAM PPR: pentatricopeptide repeat domain 211 242 IPR002885 -
Cmo16g00562 845 TIGRFAM PPR: pentatricopeptide repeat domain 492 522 IPR002885 -
Cmo16g00562 845 TIGRFAM PPR: pentatricopeptide repeat domain 314 348 IPR002885 -
Cmo16g00562 845 TIGRFAM PPR: pentatricopeptide repeat domain 699 732 IPR002885 -
Cmo16g00562 845 TIGRFAM PPR: pentatricopeptide repeat domain 349 382 IPR002885 -
Cmo16g00562 845 TIGRFAM PPR: pentatricopeptide repeat domain 734 768 IPR002885 -
Cmo16g00562 845 TIGRFAM PPR: pentatricopeptide repeat domain 665 698 IPR002885 -
Cmo16g00562 845 TIGRFAM PPR: pentatricopeptide repeat domain 559 590 IPR002885 -
Cmo16g00562 845 Gene3D Tetratricopeptide repeat domain 307 440 IPR011990 GO:0005515
Cmo16g00562 845 Gene3D Tetratricopeptide repeat domain 85 235 IPR011990 GO:0005515
Cmo16g00562 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 732 766 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00562 - - - csv:101211036 1302.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00287 Cmo-Chr4:1444475 Cmo16g00562 Cmo-Chr16:2743860 2.01E-71 dispersed
Cmo10g00528 Cmo-Chr10:2401205 Cmo16g00562 Cmo-Chr16:2743860 1.30E-34 dispersed
Cmo11g00493 Cmo-Chr11:2378660 Cmo16g00562 Cmo-Chr16:2743860 8.44E-17 dispersed
Cmo12g00235 Cmo-Chr12:1545985 Cmo16g00562 Cmo-Chr16:2743860 1.19E-27 dispersed
Cmo16g00562 Cmo-Chr16:2743860 Cmo20g00461 Cmo-Chr20:2138279 6.22E-20 dispersed
Cmo16g00562 Cmo-Chr16:2743860 Cmo04g00634 Cmo-Chr4:3136383 2.74E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g934 . . . . . . . . . Cmo16g00562 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007305 0 5 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00562 Cmo_Chr16 FPKM 0.895833 1.372383 0.288116 0.090875 1.348559 1.731981 2.062016 0.0 0.0 0.0