Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00568 ATGGCGGCCATTTCAATCTTCTTCTATTTCTTACTTTTTTCCTTCTCCGTAGCAGCCACCGGTCGCGGTGGTGGAAATGGCTTCACCACCTCTATAATCCACCGTGATTCCCTTCTCTCTCCTCTCCACAACCCATCTGTCTCCCGCTACCAACGGCTTACCGGTGCCTTCAACCGCTCTTTCTCCCGTTCCACCACCCTCACCAATCGGGCCACCACCGTCTCCACTGGCGGCGTTCATTCTCCGCTCATACCTGACAGCGGCGAGTTCTTAATATCCCTCTCTATTGGAACCCCGCCGGTGGATTTCACCGCCATCGCCGACACTGGCAGTGACCTGACGTGGACACAATGTTTGCCATGTGTCAAATGCTTCAACCAATCAAATCCCATTTTTAATCCACATCGATCATCCTCTTATAGCAACGTGTCTTGCACGTCTGATACTTGCAACTCCATCGTTAGCCACCGTTGTGGTCCCGACCTCAAAACCTGCACCTATGGCTACAGCTACGGAGACCAATCCTTCACGTATGGTGACCTGGCATATGAGAAAATTACCATTGGGTCCTTCAAACTCAACAAGGTAGTCATTGGATGCGGCCACGAAAATGGCGGCACTTTCCTCGGAGAGACCTCGGGGATCGTTGGACTCGGCGGCGGCCCTCTCTCTTTGGTTTCGCAACTGAACACAATTGCCACCGTCAAACGGCAGTTCTCGTATTGCTTGCCGACATTCTTCAGTGACGGGAATATCACAGGCAAAATAAGCTTCGGTGAAGAAGCTGCCGTGTCGGGGCGAAAAGTCGTTTCTACCCCTCTCGTGCAGAAACATCCCTATACGTACTATTTCTTGACTCTTGAAGCGATCTCGGTTGCTAACAAGAGGTTTGAGGTTGCAGACAACATGTCGTCTGCAGTAGTAGAAGGGAATATCATTATTGATTCCGGTACGACATTGACACTTTTGCCCCCGAATATGTACGACGGTGTCGTTTCGGCTTTGGCAAGAGTTGTTAAAGCGAAGCGGGTGAATGATCCATCTGGGATTTTGGAACTCTGCTATGGTGTGAGCAGCATTGACGACTTGAATATTCCGATCATTACGGCACATTTTGCTGGTGGCGCCGCCGTAGAATTGCAGCTGGAGAATACGTTTGCTTTGGTAAATGAAGATGTGGCTTGTTTGACTTTGGCACCGGCGAAGAAATTTGCCATTTTTGGGAACTTGGCGCAGGTTAACTTTTTAGTCGGATATGATCTGGAGCAGAAGACAGTGTCGTTTAAACGTACTCTTTGTGGTTAG 1305 49.66 MAAISIFFYFLLFSFSVAATGRGGGNGFTTSIIHRDSLLSPLHNPSVSRYQRLTGAFNRSFSRSTTLTNRATTVSTGGVHSPLIPDSGEFLISLSIGTPPVDFTAIADTGSDLTWTQCLPCVKCFNQSNPIFNPHRSSSYSNVSCTSDTCNSIVSHRCGPDLKTCTYGYSYGDQSFTYGDLAYEKITIGSFKLNKVVIGCGHENGGTFLGETSGIVGLGGGPLSLVSQLNTIATVKRQFSYCLPTFFSDGNITGKISFGEEAAVSGRKVVSTPLVQKHPYTYYFLTLEAISVANKRFEVADNMSSAVVEGNIIIDSGTTLTLLPPNMYDGVVSALARVVKAKRVNDPSGILELCYGVSSIDDLNIPIITAHFAGGAAVELQLENTFALVNEDVACLTLAPAKKFAIFGNLAQVNFLVGYDLEQKTVSFKRTLCG 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2762979 2764283 + CmoCh16G005680.1 Cmo16g00568 399603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00568 434 PANTHER ASPARTIC PROTEINASE CDR1-RELATED 7 433 - -
Cmo16g00568 434 SUPERFAMILY Acid proteases 85 433 IPR021109 -
Cmo16g00568 434 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 312 323 IPR001969 GO:0004190|GO:0006508
Cmo16g00568 434 Gene3D Acid Proteases 69 258 IPR021109 -
Cmo16g00568 434 Pfam Xylanase inhibitor C-terminal 283 429 IPR032799 -
Cmo16g00568 434 Pfam Xylanase inhibitor N-terminal 90 259 IPR032861 -
Cmo16g00568 434 CDD pepsin_A_like_plant 89 433 IPR034161 -
Cmo16g00568 434 Gene3D Acid Proteases 259 434 IPR021109 -
Cmo16g00568 434 ProSiteProfiles Peptidase family A1 domain profile. 90 429 IPR033121 -
Cmo16g00568 434 PRINTS Pepsin (A1) aspartic protease family signature 96 116 IPR001461 GO:0004190|GO:0006508
Cmo16g00568 434 PRINTS Pepsin (A1) aspartic protease family signature 312 323 IPR001461 GO:0004190|GO:0006508
Cmo16g00568 434 PANTHER OS07G0603500 PROTEIN-RELATED 7 433 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00568 - - K01381 cmax:111483445 805.438
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00630 Cmo-Chr4:3121202 Cmo16g00568 Cmo-Chr16:2762979 1.05E-35 dispersed
Cmo04g00631 Cmo-Chr4:3126628 Cmo16g00568 Cmo-Chr16:2762979 0 dispersed
Cmo16g00568 Cmo-Chr16:2762979 Cmo08g00950 Cmo-Chr8:6187371 4.91E-98 dispersed
Cmo08g00892 Cmo-Chr8:5779017 Cmo16g00568 Cmo-Chr16:2762979 0 transposed
Cmo16g00568 Cmo-Chr16:2762979 Cmo04g00627 Cmo-Chr4:3114183 8.50E-153 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g925 Blo02g01168 . . . . . . . . Cmo16g00568 . . . . . Cpe14g00442 . . . . . . . . . . . . . . . . . Cone6ag0876 . . . . . . . . . . . . . . . . . Cma16g00522 . . Cpe01g00529 . . . . . . . . . . . . . . . . Csa04g00694 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001637 0 2 1 0 0 2 0 3 2 3 1 2 4 3 2 6 2 1 5 3 3 1 3 5 6 2 2 4 3 0 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00568 Cmo_Chr16 FPKM 0.153131 0.0 0.175861 0.380767 0.043057 0.119053 0.048374 0.16942 0.150118 0.130903