Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00571 ATGACCCGAGGAAAACAAAAGATCGAAGCTCAGAGGCGAAATGCGGAGAAGAATCAGAAGCAGAAAGGCTCGCAGTTCGAGGCTAGAGCCGTTGCGCTTAAAGTCATCTGCCCTATTTGCAAGGTGCAACTAGCAAATCATAACCAATTGGGTGATCACTATGCCTCCAAACATCCAAAGGAAAAGCCACCGTCAGAATCTGGCTGA 207 47.83 MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPKEKPPSESG 68
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2765195 2767499 + CmoCh16G005710.1 Cmo16g00571 399606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00571 68 MobiDBLite consensus disorder prediction 1 25 - -
Cmo16g00571 68 Pfam 4F5 protein related disordered region 1 25 IPR007513 -
Cmo16g00571 68 Coils Coil 5 25 - -
Cmo16g00571 68 MobiDBLite consensus disorder prediction 1 23 - -
Cmo16g00571 68 Pfam Zinc-finger of C2H2 type 37 57 - -
Cmo16g00571 68 ProSitePatterns Zinc finger C2H2 type domain signature. 37 58 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00571 - - - ming:122068724 133.265
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00571 Cmo-Chr16:2765195 Cmo04g00624 Cmo-Chr4:3101164 1.39E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g920 Blo02g01166 . . . Bpe05g00712 . . . . Cmo16g00571 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe01g00527 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011529 0 0 1 1 1 0 2 1 1 1 1 1 1 1 1 2 0 2 1 0 0 1 1 0 1 1 0 1 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00571 Cmo_Chr16 FPKM 2.100233 2.069073 9.401983 8.936901 14.387374 12.775374 15.037536 17.721159 15.716216 17.606844