Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00577 ATGACCGAGCCCGATTCCAATCACCCATCCACCCTTTTCCCCAAATCCACCCACCGCTCCGCCCCCGACGACCGGACCCAGCTCATGGATTTCGATCTCGACTTGGACTTCCCTTGGTCCTTGGATCAAATCCCTTCATTCGCTTCCAACCCCATGTCCCCTTTTCTCGTTTCCACCTCCGATCATCTCGGTTCCCCTCTCTGGGCCTTCTCCGAACCCGACGACGACGACGATTCCAAGTTTCCTGCCTCTACCTGCTCTGTTCTTGGTACTTCCAATTCCAATTCTGTACCACAAAAGCCGTCCGAGAATCACAAGTTCAAAATTCTTCCAGTTCAATCTTCATCATGGGGACTAATCCCATCGGAGAATCCAGATGGGTATTGCTTAATCAAAGAAAAAATGGCACAGGCTCTTCGATACATTAAGGAATCCTCCGACCAGCATGTTCTAGCTCAGGTTTGGGCGCCCGTAAAAAGTGGTGGCAAACTTGTACTTTCAACTTCTGGCCAACCCTTCGTCCTTGATTCACAGAGCAATGGACTTCATCAGTATAGGATGGCCTCTTTGACTTTTATGTTTTCTTTGGAGCCCGACCAGGATGGATATCTTGGTCTCCCTGGTCGTGTTTTCCAGCAAAAGTTGCCTGAATGGACTCCAAATGTGCAGTATTACTCAAGCAAGGAGTACCCTCGACTTAGTCATGCTCTTCACTACAATGTTCAAGGAACTTTGGCTTTGCCTGTTTTTGACCCGTCCGGGCAGTCTTGTCTCGGTGTTCTTGAGCTTATCATGACCTCACCAAAGATCAATTATGCACCCGAGGTGGACAAAGTCTGCAAAGCTCTTGAGGCTGTGAATCTAAAAAGTTCAGAGATTTTGGATCATCCAAATAATCAGATTTGCAACGAAGGTCGACAGAATGCACTGGCTGAAATTTTGGAGGTACTCACAGTTGTATGCGAAACTCATAACTTACCATTGGCTCAAACCTGGGTTCCGTGCAGGCACCGAAATGTGCTCGCTTACGGTGGAGGTTTGAAGAAAAGCTGTACTAGCTTTGATGGTAGTTGCATGGGACGGATTTGTATGTCTGCAACTGAAGTAGCGTCGTATGTTGTCGATGCTCACATGTGGGGTTTTCGTGACGCATGTTTAGAACATCATTTACGAAAGGGTCAAGGTGTTTCTGGGCGAGCGTTTTTATCCCACAGCTCATGTTTTTGTGGAGATATCACTCAATTCTCCAAGACTGAGTACCCTTTGGTACATTATGCACTCATGTTCGGATTAAAGAGCTGTTTTTCGATCTGTTTACGAAGCACGTTTACTGGAGACGATGAGTACATTCTAGAGTTTTTCCTGCCACCGAGCATTGTCGATTATCAGGAACAAAAGACTTTGTTGGGTGCATTGATGGCAACAATGAAGCAGCATTTCTACACTCTCAAAGTTGCTTCAGGAATCAACCTTAAGGACGAGGAAGGACTTGTCGAGATCATTCAAGTGTCGAGAAATGGAGGATTCGAGTCGAGAATTGAATATATTCAAATTCCTCGACCTATGGAATTGCCTCCTCACTCTGATGCCATGCCAAATGCAGGAGAGGTAGTTGCATTAGAAAAGCTGCAGCAGCAATCTTTAATGGTTCACGATACTCCAAAGGACGAAAACAATAGCGCTCGGGACGACGAAAGCCACAACCCTGCTCCTTGTCCACAGAGTAAGGAAGTAAAAAAGACGTCGGAAAGAAAGCGTGGAAAAGCTGAGAAATCGATTAGTCTCGAGGTTCTTCAACAATATTTTGCTGGCAGTCTTAAGGATGCTGCTAAAAGCCTTGGCGTTTGTCCCACGACAATGAAGCGTATCTGTAGGCAACACGGGATCTCACGGTGGCCATCTCGGAAAATCAACAAGGTCAATCGTTCACTTTCAAAGCTAAAGCGCGTAATTGAATCGGTTCAAGGGGCCGAAGGAGCATTCGGGATATCATCTCTAGCTACGAGTCCTCTTCCTGTTACCGTTAGTTCGAGTTCTCATCCTTTAACTCCGGAAGGGTCTAATCAGCAAAACTTTGTTGCTTCCCAACCATCTGATCCACAACATAAAGAAACGAACACCTCGGAAGGACAGACAATCGACACATGGGCTAGATTGGAAGATCAATTACATAGGGGAGTGTTGAGTCCCGAAGAACCAATCCACGAACAAAACGGATATCTGCCGAGGTTTGGAAATGGTTTGAGCAATTATAGAACGGGGAGTGGATCACGGGAAGAGAGCGTCGGGACACCTACTTCTCATGGTTCATGCCAAGGTAGTCCTGCAAACGACAGTGGTGTAGCTAATAATCCCATTTCTATTCCTCAGCAGCAAGAACAATGTGTTAGAAGAGAATCTCCTGAAGTAGCATTCCATCCGATCGATAAACTGAACATATCAGCACCAGCTCGTCCGATCCCGGATACGCTCGTAATGGTTGAGCCTACTGAGGAAGCATTTGGAGGAATGCTGATTGCGGATGCAGGTAGTTCCAAGGACTTACGAAATCTTTGCGCTTCGGTGGCCGATGCTGTTCTCGACGAGCAAGTACCTGAGTTTTGTTGGTCCAACCCTCCTGATATAGCTCTGAGACAACCTATGGACTCTGTTTGTCACACAGTCCCTTATATGTCAGCAGGGCAAGAAGCAAGAAGGATGACTATCAAGGCGAGTTATAAGGAAGATATCATTCGGTTTCGAATTCCGTTGAGTTCGGGTATTGTGGAGTTAAGAGAAGAAGTGGCAAAGAGATTGAAAATGGAGGTGGGTACGTTCGATATCAAATACATGGACGATGATCGAGAATGGGTTCTTATGGCGTGCGATGCAGACCTGCAAGAGTGCGTAGAGATATCGAAGTCATCAGGTAGCAATATAATAAGATTGTTGGTTCATGATATAAGTGTGAATCTTGGGAGTTCTTGTGAGAGTACTGGGGAGTAA 2985 46.13 MTEPDSNHPSTLFPKSTHRSAPDDRTQLMDFDLDLDFPWSLDQIPSFASNPMSPFLVSTSDHLGSPLWAFSEPDDDDDSKFPASTCSVLGTSNSNSVPQKPSENHKFKILPVQSSSWGLIPSENPDGYCLIKEKMAQALRYIKESSDQHVLAQVWAPVKSGGKLVLSTSGQPFVLDSQSNGLHQYRMASLTFMFSLEPDQDGYLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLSHALHYNVQGTLALPVFDPSGQSCLGVLELIMTSPKINYAPEVDKVCKALEAVNLKSSEILDHPNNQICNEGRQNALAEILEVLTVVCETHNLPLAQTWVPCRHRNVLAYGGGLKKSCTSFDGSCMGRICMSATEVASYVVDAHMWGFRDACLEHHLRKGQGVSGRAFLSHSSCFCGDITQFSKTEYPLVHYALMFGLKSCFSICLRSTFTGDDEYILEFFLPPSIVDYQEQKTLLGALMATMKQHFYTLKVASGINLKDEEGLVEIIQVSRNGGFESRIEYIQIPRPMELPPHSDAMPNAGEVVALEKLQQQSLMVHDTPKDENNSARDDESHNPAPCPQSKEVKKTSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGISSLATSPLPVTVSSSSHPLTPEGSNQQNFVASQPSDPQHKETNTSEGQTIDTWARLEDQLHRGVLSPEEPIHEQNGYLPRFGNGLSNYRTGSGSREESVGTPTSHGSCQGSPANDSGVANNPISIPQQQEQCVRRESPEVAFHPIDKLNISAPARPIPDTLVMVEPTEEAFGGMLIADAGSSKDLRNLCASVADAVLDEQVPEFCWSNPPDIALRQPMDSVCHTVPYMSAGQEARRMTIKASYKEDIIRFRIPLSSGIVELREEVAKRLKMEVGTFDIKYMDDDREWVLMACDADLQECVEISKSSGSNIIRLLVHDISVNLGSSCESTGE 994
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2791791 2795653 - CmoCh16G005770.1 Cmo16g00577 399612

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00577 994 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 23 992 - -
Cmo16g00577 994 MobiDBLite consensus disorder prediction 553 590 - -
Cmo16g00577 994 MobiDBLite consensus disorder prediction 1 25 - -
Cmo16g00577 994 MobiDBLite consensus disorder prediction 748 786 - -
Cmo16g00577 994 CDD PB1_NLP 900 980 IPR034891 -
Cmo16g00577 994 Pfam PB1 domain 900 980 IPR000270 GO:0005515
Cmo16g00577 994 MobiDBLite consensus disorder prediction 673 712 - -
Cmo16g00577 994 Pfam RWP-RK domain 592 640 IPR003035 -
Cmo16g00577 994 SMART PB1_new 899 981 IPR000270 GO:0005515
Cmo16g00577 994 ProSiteProfiles PB1 domain profile. 899 981 IPR000270 GO:0005515
Cmo16g00577 994 PANTHER PROTEIN NLP8 23 992 IPR045012 GO:0003700
Cmo16g00577 994 MobiDBLite consensus disorder prediction 733 786 - -
Cmo16g00577 994 ProSiteProfiles RWP-RK domain profile. 579 660 IPR003035 -
Cmo16g00577 994 MobiDBLite consensus disorder prediction 1 17 - -
Cmo16g00577 994 SUPERFAMILY CAD & PB1 domains 890 982 - -
Cmo16g00577 994 Gene3D - 896 982 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00577 - - - cmax:111483346 1989.16
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00603 Cmo16g00577 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02071 Cmo-Chr1:14430546 Cmo16g00577 Cmo-Chr16:2791791 5.22E-13 dispersed
Cmo06g01695 Cmo-Chr6:11666457 Cmo16g00577 Cmo-Chr16:2791791 1.90E-19 dispersed
Cmo10g00207 Cmo-Chr10:926403 Cmo16g00577 Cmo-Chr16:2791791 5.72E-08 dispersed
Cmo14g01455 Cmo-Chr14:11819350 Cmo16g00577 Cmo-Chr16:2791791 1.41E-21 dispersed
Cmo16g00577 Cmo-Chr16:2791791 Cmo12g00597 Cmo-Chr12:3678268 4.68E-10 dispersed
Cmo16g00577 Cmo-Chr16:2791791 Cmo04g00618 Cmo-Chr4:3076828 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g190 . . Bda06g00162 . Bpe05g00708 Bpe07g00057 . . Cmo06g00603 Cmo16g00577 . . . . . Cpe14g00447 . . . . . . . . Cla07g01080 Cam07g1420 Cec07g1236 Cco07g1216 Clacu07g1141 Cmu07g1123 Cre07g1500 . . . . . . . Cme07g01523 . . . . . . . . . . . Cma06g00596 Cma16g00528 . . . . . . . . . . . . . . . . . . . . Chy07g01125 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo16g00577 CST 186 994 NLP Transcription Factor Family AT1G64530 50.4 9.5e-214 740.7
Cmo04g00618 . 198 1004 NLP Transcription Factor Family AT1G64530 50.6 1.1e-206 717.2
Cmo16g00577 CST 265 994 NLP Transcription Factor Family AT4G24020 54.9 8.8e-204 707.6
Cmo04g00618 . 277 1004 NLP Transcription Factor Family AT4G24020 52.6 4.1e-193 672.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11275 PF00564 PB1 4.90E-18 CL0072 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00577 Cmo_Chr16 FPKM 2.715061 2.785346 0.273914 0.31862 0.231587 0.064663 0.0 0.0 0.0 0.0