Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00583 ATGGAGGATATCAGAGCACGCGCCGCCGCCACGGCCTTGCCTCTAAACTCCCAACACATTTCTCGACGCGCCACCACCTTTAACCGCTTATTCGCCGCCATTTACAGCGGCGCTATTTTGGCTTTGTTTTACCATCACATGGCTTCACTTCTCAAACCCACCTCTTTGGGTTCCTTCTTCGTCTCTGTTTCCCTGTTCATCTCCGACATCATTTTGGCCTTCATGTGGGTCAACGCTCAATCCTACCGGATGAATCCACTCCACCGCCGTGAGTACCCCGGAAACCTGAAAGAATCACTAAACAAAGAATCAGATTTTCCGGCGTTGGATGTGTTTATTTGCACGGCGGATCCATACAAGGAGCCGCCGATTAACGTAGTCAACACGGCTCTGTCCGTCATGGCCTATGACTACCCGACATGTAAGATCTCAGTGTATGTGTCGGACGACGGCGGCTCCGCCCTGACGCTCTTCGCTTTTATGGAGGCGGCTAGGTTCGCCGCCGAGTGGTTGCCGTTTTGCAGGAAAAACGGCGTCGTAGAAAGGAATCCCGATGCCTTCTTCACGTCCAACAACGATTGGAGCTCCGAAACGGACAAGATGAAGGAAATTTATGAGAAAATGAAAATGAAAGTAGAAAATGTTGTGAAGAAAGGGAAGGTTGGAGATGAGTTGATGAATGGAGAAGAAGAGCTTATGGCTCTCAATCAATGGACCACGTCCTTTACTCCTAAACGTCATCCCTCTCTTATTAAGGTACTCTTAGAGAGCGCTAAAAGTAAAGATTGGAGAGTCGTTACCGAATCTCATCTATGTTTCGAGGCAAAAAAGTGA 834 48.68 MEDIRARAAATALPLNSQHISRRATTFNRLFAAIYSGAILALFYHHMASLLKPTSLGSFFVSVSLFISDIILAFMWVNAQSYRMNPLHRREYPGNLKESLNKESDFPALDVFICTADPYKEPPINVVNTALSVMAYDYPTCKISVYVSDDGGSALTLFAFMEAARFAAEWLPFCRKNGVVERNPDAFFTSNNDWSSETDKMKEIYEKMKMKVENVVKKGKVGDELMNGEEELMALNQWTTSFTPKRHPSLIKVLLESAKSKDWRVVTESHLCFEAKK 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2818984 2820352 - CmoCh16G005830.1 Cmo16g00583 399618

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00583 277 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 97 211 IPR029044 -
Cmo16g00583 277 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 13 263 - -
Cmo16g00583 277 Pfam Cellulose synthase 109 262 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cmo16g00583 277 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN G3 13 263 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00583 - - - csv:101213462 387.497
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00579 Cmo-Chr16:2807018 Cmo16g00583 Cmo-Chr16:2818984 2.63E-133 dispersed
Cmo16g00583 Cmo-Chr16:2818984 Cmo09g01020 Cmo-Chr9:5436290 3.83E-46 dispersed
Cmo16g00581 Cmo-Chr16:2812922 Cmo16g00583 Cmo-Chr16:2818984 1.06E-132 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g175 . . . . . . . . . Cmo16g00583 . . . . . . . . . . . . . . Cla07g01084 Cam07g1416 Cec07g1246 Cco07g1222 Clacu07g1148 Cmu07g1128 Cre07g1505 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy07g01129 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000342 1 6 2 1 2 4 0 5 7 6 5 6 5 5 3 5 5 8 1 6 3 1 1 8 2 9 1 5 5 14 132
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00583 Cmo_Chr16 FPKM 0.968491 0.9955 2.505031 2.577269 4.760232 5.260624 4.304167 0.649942 0.4557 0.658393