Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00585 ATGGCTAATCGGGGAGGAGGGTCGTTTTCGTCTCAAGGTGGGGGAGGAGATGGACTGTACACCGAGCTTTGGAAGGCATCGGCTGGGCCTCTTGTGGAAGTTCCTCAAGTTAATGACAAGGTTTTCTACTTCCCTCAAGGCCACATGGAACAGTTGGAGGCATCTACAAATCATGAACTGAATCAGAAACATCCTTTGTTTAAACTTTCCTCCAAAATTCTCTGCCGTGTTGTTGATGTTCGCCTGCTGGCTGAGCAGGAAACAGATGAGGTTTATGCACAGATAACTTTAATGCCTGATTCAAATCAAGAGGAACCTACTAATCCTGATCCTTCGCCACCGGAGTGTCGTAAACCGAAAGTCCATTCGTTTTGCAAGGTCTTGACTGCTTCTGATACTAGCACCCATGGAGGATTCTCCGTGCTTCGTAAACACGCCACGGAATGCCTGCCTCCATTGGATATGACCCAACAGACCCCAACTCAAGAACTTGTAGCCAAAGATCTTCATGGTAACGAGTGGCGATTCAAGCATATCTTTAGGGGTCAACCACGAAGGCATTTGCTAACGACGGGATGGAGCACGTTTGTTACTTCGAAAAGACTAGTTGCTGGAGATTCTTTTGTGTTCTTGAGAGGGGAAAATGGGGAATTACGAGTCGGAGTGAGGCATCTTGCTCGCCAACAAACCAGCATGCCTTCATCTGTGATTTCAAGTCACAGCATGCACTTAGGAGTGCTTGCTACTGCATCTCACGCCGTGTTAACTCTAACTCGCTTTATTGTCTATTATAAACCAAGGGCAAGCCAGTTTATCGTCAGCTTGAATAAGTACATCGAAGCAATGAACAGGAAGTTCTTAGTTGGGATGAGATTCAAGATGAGATTCGAGGGAGAGGAGTCTCCTGAGAGAAGGTTTTCGGGTACCATTGTTGGAGTTGACGACATATCTCCTCACTGGCCCAATTCAAAATGGCGATCGCTAAGAATTCAATGGGATGAACTTGCATCTATTCCTCGACCTGATAGAGTTTCGCCATGGGAGATTGAACCTTTTGTGGCGCCTACGTCCCCGAGCATTCCACAATCGGTTTCGGTAAAGAATAAAAGGCTTCGGCCTCCACTCGACATTCCAGATTCTGATAATTCAACCGTAACAACTCTACGCCATCCAGGATCAACTCAATCACACGACGATAGAACACAGCTTAGCGGTACTGCTGCTGAAATGAAACGATTTGAAAATCACGCAATGTGGAATTACAAGCAAACGGATGTTAGCAGCATTGGGAATTCTATATCAAGGACTCCGAAGGAGGGCTCTTGGTTAGCTTCCCCAAACAGGAGTGTTTCGCAGCATCGATTACAGAATTTGACAGATGACCGAAACAGCAATTATGTTTGGTCAACCGTCTTCTCGGGAGCGCCAGCAGCACAGTCGACATGTCCAGCTCCACACCCATCTAATCCAAAGAGCAGCGACCAAGTTAACGATCTTGGGGAAAAGGGGAGGAAAACTGAGGTGGCTCCAAGCTGTCGCTTGTTCGGGATCGATATCATCGGTCATTCCAAGAGCCCAGTTCCACCTGAAATGGCTGCTGATCAACCGATTAGCGCACCAAATGAAATCACTGATGCAGAGCAGAACTCAGACCAGCCAAAGGCTTCTAAAGAAAGAAAATTAGGACTTTTACAAGTACCTCCTAAAGAGATCCAGCACAAGCAGAGCAGCTCGACCAACAGCCGAAGTCGGACCAAGGTTCAAATGCAGGGGATGGCTGTCGGACGTGCGGTGGACCTTACGATGTTGGAAGGGTATGGCGAACTCATCGACGAACTGGAAAAGATGTTCGATATCAAGGGAGAACTTCACCCACGTGATAAGTGGGAGATTGTCTTCACAGACGACGAAGGAGATACGATGCTCATGGGCGATTACCCGTGGCAGGAATTCTGTAACATGGTGAGAAGAATATATATATGGTCGAGTCAGGATGTGAAGATGATGAGTTCGGTTAGCAAACTTACAATGTCTGCAATGGAATGCGATGGGACGGTAATAACATCGAAGTCGGCCGACAGCTGA 2085 47.19 MANRGGGSFSSQGGGGDGLYTELWKASAGPLVEVPQVNDKVFYFPQGHMEQLEASTNHELNQKHPLFKLSSKILCRVVDVRLLAEQETDEVYAQITLMPDSNQEEPTNPDPSPPECRKPKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAKDLHGNEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRHLARQQTSMPSSVISSHSMHLGVLATASHAVLTLTRFIVYYKPRASQFIVSLNKYIEAMNRKFLVGMRFKMRFEGEESPERRFSGTIVGVDDISPHWPNSKWRSLRIQWDELASIPRPDRVSPWEIEPFVAPTSPSIPQSVSVKNKRLRPPLDIPDSDNSTVTTLRHPGSTQSHDDRTQLSGTAAEMKRFENHAMWNYKQTDVSSIGNSISRTPKEGSWLASPNRSVSQHRLQNLTDDRNSNYVWSTVFSGAPAAQSTCPAPHPSNPKSSDQVNDLGEKGRKTEVAPSCRLFGIDIIGHSKSPVPPEMAADQPISAPNEITDAEQNSDQPKASKERKLGLLQVPPKEIQHKQSSSTNSRSRTKVQMQGMAVGRAVDLTMLEGYGELIDELEKMFDIKGELHPRDKWEIVFTDDEGDTMLMGDYPWQEFCNMVRRIYIWSSQDVKMMSSVSKLTMSAMECDGTVITSKSADS 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2822610 2826352 - CmoCh16G005850.1 Cmo16g00585 399620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00585 694 MobiDBLite consensus disorder prediction 570 588 - -
Cmo16g00585 694 ProSiteProfiles PB1 domain profile. 582 663 IPR000270 GO:0005515
Cmo16g00585 694 ProSiteProfiles B3 DNA-binding domain profile. 124 226 IPR003340 GO:0003677
Cmo16g00585 694 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 681 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo16g00585 694 MobiDBLite consensus disorder prediction 476 496 - -
Cmo16g00585 694 MobiDBLite consensus disorder prediction 98 118 - -
Cmo16g00585 694 Pfam B3 DNA binding domain 124 223 IPR003340 GO:0003677
Cmo16g00585 694 SUPERFAMILY DNA-binding pseudobarrel domain 115 253 IPR015300 -
Cmo16g00585 694 MobiDBLite consensus disorder prediction 563 588 - -
Cmo16g00585 694 Pfam AUX/IAA family 560 618 IPR033389 -
Cmo16g00585 694 Pfam AUX/IAA family 629 666 IPR033389 -
Cmo16g00585 694 MobiDBLite consensus disorder prediction 379 402 - -
Cmo16g00585 694 Pfam Auxin response factor 250 328 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo16g00585 694 Gene3D - 285 356 - -
Cmo16g00585 694 SUPERFAMILY CAD & PB1 domains 577 658 - -
Cmo16g00585 694 PANTHER AUXIN RESPONSE FACTOR 9 15 681 - -
Cmo16g00585 694 MobiDBLite consensus disorder prediction 476 507 - -
Cmo16g00585 694 SMART B3_2 124 226 IPR003340 GO:0003677
Cmo16g00585 694 MobiDBLite consensus disorder prediction 358 402 - -
Cmo16g00585 694 Gene3D - 577 670 - -
Cmo16g00585 694 CDD B3_DNA 122 223 IPR003340 GO:0003677
Cmo16g00585 694 Gene3D - 121 225 IPR015300 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00930 Cmo16g00585 CCT
Cmo02g00930 Cmo16g00585 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00930 Cmo-Chr2:5703867 Cmo16g00585 Cmo-Chr16:2822610 0 dispersed
Cmo06g00004 Cmo-Chr6:11803 Cmo16g00585 Cmo-Chr16:2822610 1.43E-128 dispersed
Cmo08g00122 Cmo-Chr8:629552 Cmo16g00585 Cmo-Chr16:2822610 0 dispersed
Cmo16g00585 Cmo-Chr16:2822610 Cmo03g01425 Cmo-Chr3:10309688 6.09E-14 dispersed
Cmo04g02889 Cmo-Chr4:20561953 Cmo16g00585 Cmo-Chr16:2822610 5.22E-25 transposed
Cmo10g00015 Cmo-Chr10:102271 Cmo16g00585 Cmo-Chr16:2822610 8.98E-25 transposed
Cmo15g01361 Cmo-Chr15:9303666 Cmo16g00585 Cmo-Chr16:2822610 0 wgd
Cmo16g00585 Cmo-Chr16:2822610 Cmo04g00721 Cmo-Chr4:3582996 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11276 PF02362 B3 4.30E-22 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00585 K14486 - csv:101213942 1141.72