Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo16g00585 | ATGGCTAATCGGGGAGGAGGGTCGTTTTCGTCTCAAGGTGGGGGAGGAGATGGACTGTACACCGAGCTTTGGAAGGCATCGGCTGGGCCTCTTGTGGAAGTTCCTCAAGTTAATGACAAGGTTTTCTACTTCCCTCAAGGCCACATGGAACAGTTGGAGGCATCTACAAATCATGAACTGAATCAGAAACATCCTTTGTTTAAACTTTCCTCCAAAATTCTCTGCCGTGTTGTTGATGTTCGCCTGCTGGCTGAGCAGGAAACAGATGAGGTTTATGCACAGATAACTTTAATGCCTGATTCAAATCAAGAGGAACCTACTAATCCTGATCCTTCGCCACCGGAGTGTCGTAAACCGAAAGTCCATTCGTTTTGCAAGGTCTTGACTGCTTCTGATACTAGCACCCATGGAGGATTCTCCGTGCTTCGTAAACACGCCACGGAATGCCTGCCTCCATTGGATATGACCCAACAGACCCCAACTCAAGAACTTGTAGCCAAAGATCTTCATGGTAACGAGTGGCGATTCAAGCATATCTTTAGGGGTCAACCACGAAGGCATTTGCTAACGACGGGATGGAGCACGTTTGTTACTTCGAAAAGACTAGTTGCTGGAGATTCTTTTGTGTTCTTGAGAGGGGAAAATGGGGAATTACGAGTCGGAGTGAGGCATCTTGCTCGCCAACAAACCAGCATGCCTTCATCTGTGATTTCAAGTCACAGCATGCACTTAGGAGTGCTTGCTACTGCATCTCACGCCGTGTTAACTCTAACTCGCTTTATTGTCTATTATAAACCAAGGGCAAGCCAGTTTATCGTCAGCTTGAATAAGTACATCGAAGCAATGAACAGGAAGTTCTTAGTTGGGATGAGATTCAAGATGAGATTCGAGGGAGAGGAGTCTCCTGAGAGAAGGTTTTCGGGTACCATTGTTGGAGTTGACGACATATCTCCTCACTGGCCCAATTCAAAATGGCGATCGCTAAGAATTCAATGGGATGAACTTGCATCTATTCCTCGACCTGATAGAGTTTCGCCATGGGAGATTGAACCTTTTGTGGCGCCTACGTCCCCGAGCATTCCACAATCGGTTTCGGTAAAGAATAAAAGGCTTCGGCCTCCACTCGACATTCCAGATTCTGATAATTCAACCGTAACAACTCTACGCCATCCAGGATCAACTCAATCACACGACGATAGAACACAGCTTAGCGGTACTGCTGCTGAAATGAAACGATTTGAAAATCACGCAATGTGGAATTACAAGCAAACGGATGTTAGCAGCATTGGGAATTCTATATCAAGGACTCCGAAGGAGGGCTCTTGGTTAGCTTCCCCAAACAGGAGTGTTTCGCAGCATCGATTACAGAATTTGACAGATGACCGAAACAGCAATTATGTTTGGTCAACCGTCTTCTCGGGAGCGCCAGCAGCACAGTCGACATGTCCAGCTCCACACCCATCTAATCCAAAGAGCAGCGACCAAGTTAACGATCTTGGGGAAAAGGGGAGGAAAACTGAGGTGGCTCCAAGCTGTCGCTTGTTCGGGATCGATATCATCGGTCATTCCAAGAGCCCAGTTCCACCTGAAATGGCTGCTGATCAACCGATTAGCGCACCAAATGAAATCACTGATGCAGAGCAGAACTCAGACCAGCCAAAGGCTTCTAAAGAAAGAAAATTAGGACTTTTACAAGTACCTCCTAAAGAGATCCAGCACAAGCAGAGCAGCTCGACCAACAGCCGAAGTCGGACCAAGGTTCAAATGCAGGGGATGGCTGTCGGACGTGCGGTGGACCTTACGATGTTGGAAGGGTATGGCGAACTCATCGACGAACTGGAAAAGATGTTCGATATCAAGGGAGAACTTCACCCACGTGATAAGTGGGAGATTGTCTTCACAGACGACGAAGGAGATACGATGCTCATGGGCGATTACCCGTGGCAGGAATTCTGTAACATGGTGAGAAGAATATATATATGGTCGAGTCAGGATGTGAAGATGATGAGTTCGGTTAGCAAACTTACAATGTCTGCAATGGAATGCGATGGGACGGTAATAACATCGAAGTCGGCCGACAGCTGA | 2085 | 47.19 | MANRGGGSFSSQGGGGDGLYTELWKASAGPLVEVPQVNDKVFYFPQGHMEQLEASTNHELNQKHPLFKLSSKILCRVVDVRLLAEQETDEVYAQITLMPDSNQEEPTNPDPSPPECRKPKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAKDLHGNEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRHLARQQTSMPSSVISSHSMHLGVLATASHAVLTLTRFIVYYKPRASQFIVSLNKYIEAMNRKFLVGMRFKMRFEGEESPERRFSGTIVGVDDISPHWPNSKWRSLRIQWDELASIPRPDRVSPWEIEPFVAPTSPSIPQSVSVKNKRLRPPLDIPDSDNSTVTTLRHPGSTQSHDDRTQLSGTAAEMKRFENHAMWNYKQTDVSSIGNSISRTPKEGSWLASPNRSVSQHRLQNLTDDRNSNYVWSTVFSGAPAAQSTCPAPHPSNPKSSDQVNDLGEKGRKTEVAPSCRLFGIDIIGHSKSPVPPEMAADQPISAPNEITDAEQNSDQPKASKERKLGLLQVPPKEIQHKQSSSTNSRSRTKVQMQGMAVGRAVDLTMLEGYGELIDELEKMFDIKGELHPRDKWEIVFTDDEGDTMLMGDYPWQEFCNMVRRIYIWSSQDVKMMSSVSKLTMSAMECDGTVITSKSADS | 694 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 2822610 | 2826352 | - | CmoCh16G005850.1 | Cmo16g00585 | 399620 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo16g00585 | 694 | MobiDBLite | consensus disorder prediction | 570 | 588 | - | - | |
Cmo16g00585 | 694 | ProSiteProfiles | PB1 domain profile. | 582 | 663 | IPR000270 | GO:0005515 | |
Cmo16g00585 | 694 | ProSiteProfiles | B3 DNA-binding domain profile. | 124 | 226 | IPR003340 | GO:0003677 | |
Cmo16g00585 | 694 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 15 | 681 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cmo16g00585 | 694 | MobiDBLite | consensus disorder prediction | 476 | 496 | - | - | |
Cmo16g00585 | 694 | MobiDBLite | consensus disorder prediction | 98 | 118 | - | - | |
Cmo16g00585 | 694 | Pfam | B3 DNA binding domain | 124 | 223 | IPR003340 | GO:0003677 | |
Cmo16g00585 | 694 | SUPERFAMILY | DNA-binding pseudobarrel domain | 115 | 253 | IPR015300 | - | |
Cmo16g00585 | 694 | MobiDBLite | consensus disorder prediction | 563 | 588 | - | - | |
Cmo16g00585 | 694 | Pfam | AUX/IAA family | 560 | 618 | IPR033389 | - | |
Cmo16g00585 | 694 | Pfam | AUX/IAA family | 629 | 666 | IPR033389 | - | |
Cmo16g00585 | 694 | MobiDBLite | consensus disorder prediction | 379 | 402 | - | - | |
Cmo16g00585 | 694 | Pfam | Auxin response factor | 250 | 328 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Cmo16g00585 | 694 | Gene3D | - | 285 | 356 | - | - | |
Cmo16g00585 | 694 | SUPERFAMILY | CAD & PB1 domains | 577 | 658 | - | - | |
Cmo16g00585 | 694 | PANTHER | AUXIN RESPONSE FACTOR 9 | 15 | 681 | - | - | |
Cmo16g00585 | 694 | MobiDBLite | consensus disorder prediction | 476 | 507 | - | - | |
Cmo16g00585 | 694 | SMART | B3_2 | 124 | 226 | IPR003340 | GO:0003677 | |
Cmo16g00585 | 694 | MobiDBLite | consensus disorder prediction | 358 | 402 | - | - | |
Cmo16g00585 | 694 | Gene3D | - | 577 | 670 | - | - | |
Cmo16g00585 | 694 | CDD | B3_DNA | 122 | 223 | IPR003340 | GO:0003677 | |
Cmo16g00585 | 694 | Gene3D | - | 121 | 225 | IPR015300 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g00930 | Cmo16g00585 | CCT | |
Cmo02g00930 | Cmo16g00585 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00930 | Cmo-Chr2:5703867 | Cmo16g00585 | Cmo-Chr16:2822610 | 0 | dispersed | |
Cmo06g00004 | Cmo-Chr6:11803 | Cmo16g00585 | Cmo-Chr16:2822610 | 1.43E-128 | dispersed | |
Cmo08g00122 | Cmo-Chr8:629552 | Cmo16g00585 | Cmo-Chr16:2822610 | 0 | dispersed | |
Cmo16g00585 | Cmo-Chr16:2822610 | Cmo03g01425 | Cmo-Chr3:10309688 | 6.09E-14 | dispersed | |
Cmo04g02889 | Cmo-Chr4:20561953 | Cmo16g00585 | Cmo-Chr16:2822610 | 5.22E-25 | transposed | |
Cmo10g00015 | Cmo-Chr10:102271 | Cmo16g00585 | Cmo-Chr16:2822610 | 8.98E-25 | transposed | |
Cmo15g01361 | Cmo-Chr15:9303666 | Cmo16g00585 | Cmo-Chr16:2822610 | 0 | wgd | |
Cmo16g00585 | Cmo-Chr16:2822610 | Cmo04g00721 | Cmo-Chr4:3582996 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11276 | PF02362 | B3 | 4.30E-22 | CL0405 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo16g00585 | K14486 | - | csv:101213942 | 1141.72 |