Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00586 ATGGAGAGTAACCCGCAATCGCTTAGGCAATTCAGCGACCAGCTTCGACTGCAATCTGGGAATCTTACGAACCTGTCGCTCAACGATTCTATCTGGAGCAATTCGTACGTCTCCAAGAGGCAGGAAGAGAGGAGGAATTTCGATGTGCGAAATGGCGGAGAGGTAAATTTAGTGAATAATTTTAAGCCCAAACTGTGTGATTCTGATGTTAATCGGTTCAATGATGGATGGAATAGTTTTAAGCCGAGTGTTGCTTCTGATCTTAATAATTGGAGTAACAGTAGCAATCTTAGTTCAACTGGGTATGAGAAGAATGCACTCAATGTGTTTGATAATGGGTGGAATAGTTTGAAGCCACAGGGGTCTGATTTTAATGGCTTCAACGATGGGTGGAAGCTTAATTCTGCAAATATGGGGGTTGATTCAGTGATTGGAGGAACCCAAAAGGGTATTAATGGAGGGATTTACTCACAAATTGGGAATTTTAACAGTAATGGTTTTGTAAATGTGAAGAACTACAAGAACAGTGGGAAGGTTGAAGAAGAAAATGGAGGAAAGAATGGGAAGAAGAACAGTAACAAGAAGATTAATGGTGAAAATAGCAATGATAATAAGGAAAGTAATAAGAATGGTTTGGACAAGAGGTTCAAAACCCTTCCCCCATCTGAGTCTTTGCCCAGAAATGAAACAATTGGTGGATATATCTTTGTGTGCAACAATGATACAATGCAAGAGAATCTGAAGAGGCAGCTTTTTGGTTTGCCTCCAAGATACAGGGATTCTGTCAGGGCCATAACTCCTGGGCTGCCTATTTTCCTCTACAACTATTCTACCCACCAACTCCATGGAATCTTTGAGGCTGCAAGCTTTGGAGGGACAAACATTGATCCAACTGCCTGGGAAGACAAGAAAACTCCGGGCGAATCTCGTTTCCCGGCGCAGGTCAGAACTGTGACTAGGAAGATATGTGAGCCACTGGAAGAGGACTCTTTCAGACCGATTCTTCACCACTATGACGGTCCCAAGTTTCGTCTCGAACTCAACATCCCAGAGGCACTCTCTCTTCTGGATATATTTGAAGAACAATCCTGTTGA 1095 42.65 MESNPQSLRQFSDQLRLQSGNLTNLSLNDSIWSNSYVSKRQEERRNFDVRNGGEVNLVNNFKPKLCDSDVNRFNDGWNSFKPSVASDLNNWSNSSNLSSTGYEKNALNVFDNGWNSLKPQGSDFNGFNDGWKLNSANMGVDSVIGGTQKGINGGIYSQIGNFNSNGFVNVKNYKNSGKVEEENGGKNGKKNSNKKINGENSNDNKESNKNGLDKRFKTLPPSESLPRNETIGGYIFVCNNDTMQENLKRQLFGLPPRYRDSVRAITPGLPIFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKTPGESRFPAQVRTVTRKICEPLEEDSFRPILHHYDGPKFRLELNIPEALSLLDIFEEQSC 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2836960 2839063 + CmoCh16G005860.1 Cmo16g00586 399621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00586 364 Pfam Development and cell death domain 232 359 IPR013989 -
Cmo16g00586 364 PANTHER - 7 363 IPR044832 GO:0034976
Cmo16g00586 364 ProSiteProfiles DCD domain profile. 229 361 IPR013989 -
Cmo16g00586 364 SMART dcd 229 361 IPR013989 -
Cmo16g00586 364 PANTHER DCD (DEVELOPMENT AND CELL DEATH) DOMAIN PROTEIN 7 363 - -
Cmo16g00586 364 MobiDBLite consensus disorder prediction 177 225 - -
Cmo16g00586 364 MobiDBLite consensus disorder prediction 177 193 - -
Cmo16g00586 364 MobiDBLite consensus disorder prediction 199 213 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00586 - - - csv:101208173 631.328
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01614 Cmo-Chr11:11542371 Cmo16g00586 Cmo-Chr16:2836960 6.34E-94 dispersed
Cmo14g00033 Cmo-Chr14:166273 Cmo16g00586 Cmo-Chr16:2836960 1.85E-28 dispersed
Cmo14g00732 Cmo-Chr14:3749453 Cmo16g00586 Cmo-Chr16:2836960 1.29E-89 dispersed
Cmo15g01362 Cmo-Chr15:9319568 Cmo16g00586 Cmo-Chr16:2836960 3.77E-14 dispersed
Cmo16g00586 Cmo-Chr16:2836960 Cmo12g01110 Cmo-Chr12:10123236 2.07E-18 dispersed
Cmo16g00586 Cmo-Chr16:2836960 Cmo04g00722 Cmo-Chr4:3597550 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g160 . . . . . . Bma07g01687 . . Cmo16g00586 . . . . . Cpe14g00450 . . . . . . . . Cla07g01087 Cam07g1411 Cec07g1250 Cco07g1227 Clacu07g1152 Cmu07g1131 Cre07g1511 . . . . . . . Cme07g01537 . Blo19g00370 . Bda09g00012 Bpe08g01522 . . . . . . . Cma16g00534 . . . . . . . . . . . . . . . . . . . Csa04g00676 Chy07g01134 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007398 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00586 Cmo_Chr16 FPKM 32.405861 35.97279 30.16433 31.656073 32.898548 27.690588 33.948509 39.476719 36.585732 37.150478