Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00590 ATGGAGATTGCCTCTGCTGCCACAATTGCCTTGTTGTCCCAACCTTTTCCTATAGCTGCGATTGTTACTTTTCTTTGTTTTCTTCTCGCTCTTTTCGCCGCCGTTCGATTGGTTTCTGTTCCTTACATTAGAAGGACGAAAACGGTACAATTGGAGGGCGTGGGTACGAGGAATTTTAATTGTACCTGTTCGCTTAACGGTGGTGTGGCTATTGGGGGTTTGAACCCCAGGGCTGAGATTACTTCTTCGACTAGTACGAGTATGCCTTATTTGAACGGTCGTGCAGTGGAAGTGCTGGAGAAGGCGCCGGTTGTTGTAACGGAGCGGCAGACGGGCGCTTCGATGATGGAGCAGTTGGTCCCGGAGATTACTACGCACGCTCTTAGTTACTTGGATTATCCCAGCCTGTGTCGTTTGTCCATGACTAATTCCTTGATGCGGAAAGCCGCGAATGATGATAGTGCCTGGAAGGCGCTTTATCATAAGGTACGAGTTCGGTTTAATCTTCTTTTGTACGTGACGGGGAAGAAACACGAATGGAATGTAGTGTTATTTGTTTCGAACTTGTGCTACCATAGTCAGCATCTTTTTGTAATTCTGGAGGGGAGCGAACTGACTTTATTAACTCTTATCTTTCAAATAATGAAATCGTTTCAATTGATGGCTTGTGGCCGAAGTTCTGGAATTGGCAAGACCCATCTCTGTGCTCCCCACCACTTTTGTGACTTCACACTGGAACAGGATACTGTAACTCCAATTAACGGGTGGAAGGCATATTATGCTGCAACAAGAACAATTATGAATATCAATGCCCAATTCTATAACATCATCAGAGACAGGTCTCTTCAAGCGATGAGTCATTTTTGGTTAAATGCAGATTATGTGAAGTGTATTCATGCCTCAGGAGAATTCTTTTCCGGGTATAATGCCGTAATTCAAAGTTGGCAGGTTGCATTCAATTGGGAACAAGGGATTAATTTTCAGGTCCGTGATGTACGGGCTCGTGTGCTTACAGACATGGCTTGGGTTAGCATGAAAACCTACGTTGACATGGATACAGGGCCATTCAATGTGACTAACATCTATGAGTTCCATAATGGTCGATGGTACATGGTGCATCATCACAGCTCCGTGATGCTCATTGTTGGCGAGATGGAACAACAAATGGTTCATGGAGGGTATAAGGCAAGGCCTGTGGACGGGAAGAAATTGAGAGGGGAGGATACAACAGTCCCTGGTTTTGGTTGGTGGCCTATAATGGCATAA 1266 45.1 MEIASAATIALLSQPFPIAAIVTFLCFLLALFAAVRLVSVPYIRRTKTVQLEGVGTRNFNCTCSLNGGVAIGGLNPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDSAWKALYHKVRVRFNLLLYVTGKKHEWNVVLFVSNLCYHSQHLFVILEGSELTLLTLIFQIMKSFQLMACGRSSGIGKTHLCAPHHFCDFTLEQDTVTPINGWKAYYAATRTIMNINAQFYNIIRDRSLQAMSHFWLNADYVKCIHASGEFFSGYNAVIQSWQVAFNWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVMLIVGEMEQQMVHGGYKARPVDGKKLRGEDTTVPGFGWWPIMA 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2846961 2850535 - CmoCh16G005900.1 Cmo16g00590 399625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00590 421 SUPERFAMILY NTF2-like 261 379 IPR032710 -
Cmo16g00590 421 ProSiteProfiles F-box domain profile. 113 159 IPR001810 GO:0005515
Cmo16g00590 421 PANTHER F-BOX PROTEIN SKIP8 11 162 IPR044260 -
Cmo16g00590 421 PANTHER F-BOX PROTEIN SKIP8 240 392 IPR044260 -
Cmo16g00590 421 Pfam SnoaL-like domain 266 379 IPR037401 -
Cmo16g00590 421 SUPERFAMILY F-box domain 112 191 IPR036047 GO:0005515
Cmo16g00590 421 Gene3D - 104 157 - -
Cmo16g00590 421 Gene3D - 258 388 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00590 - - - csv:101214184 317.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00263 Cmo-Chr6:1340038 Cmo16g00590 Cmo-Chr16:2846961 6.14E-15 transposed
Cmo16g00590 Cmo-Chr16:2846961 Cmo04g00723 Cmo-Chr4:3600282 1.57E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g156 . Blo03g00257 Bda06g00156 . . Bpe07g00062 . . . Cmo16g00590 . . . . . Cpe14g00453 . . . . . . . . Cla07g01091 Cam07g1407 Cec07g1254 Cco07g1231 Clacu07g1156 Cmu07g1135 Cre07g1515 . . Cone6ag0862 Cone9ag0864 Lsi07g01122 . . Cme07g01541 . . . . . . . Bma12g00615 . . . . Cma16g00538 . . . . . . . . . . . . . . . . . . . Csa04g00672 Chy07g01138 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007131 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00590 Cmo_Chr16 FPKM 6.336698 8.465974 22.368731 23.762871 26.057699 20.098385 27.183064 5.720965 6.379376 5.864388